Miyakogusa Predicted Gene
- Lj5g3v1697130.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1697130.1 tr|Q1RSH3|Q1RSH3_MEDTR Chaperonin CPN60-like
protein OS=Medicago truncatula GN=MTR_1g090140 PE=3
SV=,92.39,0,CHAPERONIN-60KDA, CH60,NULL; CHAPERONIN,Chaperonin
Cpn60/TCP-1; Cpn60_TCP1,Chaperonin Cpn60/TCP-1; G,CUFF.55790.1
(1737 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69512 homologue to UniRef100_Q1RSH3 Cluster: GroEL-li... 1146 0.0
gnl|LJGI|TC77656 homologue to UniRef100_Q1RSH3 Cluster: GroEL-li... 979 0.0
gnl|LJGI|GO011453 similar to UniRef100_P35480 Cluster: Chaperoni... 200 2e-50
gnl|LJGI|FS354479 similar to UniRef100_A6YQS1 Cluster: 60 kDa ch... 121 2e-26
gnl|LJGI|TC58967 homologue to UniRef100_A2A1E8 Cluster: Nucleopo... 121 2e-26
gnl|LJGI|FS348619 homologue to UniRef100_A2A1E8 Cluster: Nucleop... 109 6e-23
gnl|LJGI|FS332320 similar to UniRef100_Q1RSH3 Cluster: GroEL-lik... 100 6e-20
gnl|LJGI|TC62942 similar to UniRef100_Q93ZM7 Cluster: Chaperonin... 68 2e-10
>gnl|LJGI|TC69512 homologue to UniRef100_Q1RSH3 Cluster: GroEL-like chaperone,
ATPase; n=1; Medicago truncatula|Rep: GroEL-like
chaperone, ATPase - Medicago truncatula (Barrel medic),
partial (37%)
Length = 757
Score = 1146 bits (578), Expect = 0.0
Identities = 626/642 (97%)
Strand = Plus / Plus
Query: 1 atgtatcgctttgccacttcccttgcctccaaagctcggattgctaggaacaccagtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 atgtatcgctttgccacttcccttgcctccaaagctcggattgctaggaacaccagtcaa 175
Query: 61 cagattggaagcagggcggcgtggagcaggaattatgcggccaaagacattaaatttggt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cagattggaagtagggcggcgtggagcaggaattatgcggccaaagacattaaatttggt 235
Query: 121 gtggcggctcgggctctgatgcttaagggtgttgaagagcttgctgatgcagtccaagta 180
|||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 236 gtggaggctcgggctctgatgctgaagggtgttgaagagcttgctgatgcagtcaaagta 295
Query: 181 accatgggccctaagggccgcaatgtggtgattgagcaaagttttggtgcccctaaagtg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 296 accatgggccctaagggccgcaatgtggtgattgagcaaagttatggtgcccctaaagtg 355
Query: 241 acaaaagatggagtaactgttgccaagagcattgaattcaaggataaagtcaagaatgta 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 356 acaaaagatggagtaactgttgccaagagcattgaattcaaggatagagtcaagaatgta 415
Query: 301 ggtgccagtcttgtaaagcaggttgcaaatgccaccaatgatgtggctggtgatggaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggtgccagtcttgtaaagcaggttgcaaatgccaccaatgatgtggctggtgatggaacc 475
Query: 361 acatgtgctacagttcttactcgagcaatatttgcggaagggtgcaaatcagttgcagct 420
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 476 acatgtgctactgtccttactcgagcaatatttgcggaaggttgcaaatcagttgcagct 535
Query: 421 ggtatgaatgcaatggacctgaggcgaggtataaatatggcggttgattcggtggtgaca 480
|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct: 536 ggtatgaatgcaatggacctgaggcgaggtattaatatggctgttgattctgtggtcaca 595
Query: 481 aacctgaagagcagagcacgaatgattagtacttctgaagaaatagctcaggttgggaca 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 596 aacctgaagagcagagcacgaatgattagcacttctgaagaaatagctcaggttgggaca 655
Query: 541 atatctgctaatggggagagagagattggtgaattaattgcaaaagctatggagaaagtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atatctgctaatggggagagagagattggtgaattaattgcaaaagctatggagaaagtt 715
Query: 601 ggcaaagaaggtgtaatcacaatagcagatggcaagacattg 642
|||||||||||||||||||| || ||||||||||||||||||
Sbjct: 716 ggcaaagaaggtgtaatcacgattgcagatggcaagacattg 757
>gnl|LJGI|TC77656 homologue to UniRef100_Q1RSH3 Cluster: GroEL-like chaperone, ATPase;
n=1; Medicago truncatula|Rep: GroEL-like chaperone,
ATPase - Medicago truncatula (Barrel medic), partial
(31%)
Length = 719
Score = 979 bits (494), Expect = 0.0
Identities = 558/574 (97%), Gaps = 4/574 (0%)
Strand = Plus / Plus
Query: 1168 gattatgacaaggaaaaattacaagaaagattagccaaactttctgggggtgttgcagtg 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gattatgacaaggaaaaattacaagaaagattagccaaactttctgggggtgttgcagtg 60
Query: 1228 cttaagattggaggagctagtgaggctgaagttagtgagaagaaggatagagtgacagat 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttaagattggaggagctagtgaggctgaagttagtgagaagaaggatagagtgacagat 120
Query: 1288 gcc-ttaaatgcaactaaggca-gctgtagaggagggcatattacctggtggtggtgttg 1345
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcccttaaatgcaactaaggcaagctgtagaggagggcatattacctggtggtggtgttg 180
Query: 1346 ctcttctgtatgcatctaatgagttgagtaagcttcaaactgccaactttgatcaaaaga 1405
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 181 ctcttctgtatgcatctaatgagttgagtaagcttcaaactgccaactttgatccaaaga 240
Query: 1406 taggtgtccagattatccaaaatgc-tttgaagacacctgtgcacacaattgcagcaaat 1464
||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||| ||||||
Sbjct: 241 taggtgtccagattatccacaatgcgtttgaagacccctgtgcacaccattgccgcaaat 300
Query: 1465 gctggagttgagggcgctgttgttgtcggtaaattattggaacaaaataatcctgatctt 1524
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 gctggagttgagggcgctgttgttgtcggtaaattattggaaccaaataatcctgatctt 360
Query: 1525 gggtatgatgc-agccaaaggtgaatatgttgatatggttaaatctggaataattgatcc 1583
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gggtatgatgccagcccaaggtgaatatgttgatatggttaaatctggaataattgatcc 420
Query: 1584 attgaaggtgattagaaccgcactggttgacgcagccagtgtgtcttctttgatgacaac 1643
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 421 cttgaaggtgattagaaccgcactggttgacgcagcccgtgtgtcttctttgatgaccac 480
Query: 1644 aactgaagcaattgtgactgaatttccaaaagaagataaagatgttcctgctatgggtgg 1703
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cactgaagccattgtgactgaatttccaaaagaagataaagatgttcctgctatgggtgg 540
Query: 1704 tggcatgggtggcatgggtggaatggattattag 1737
||||||||||||||||||||||||||||||||||
Sbjct: 541 tggcatgggtggcatgggtggaatggattattag 574
>gnl|LJGI|GO011453 similar to UniRef100_P35480 Cluster: Chaperonin CPN60,
mitochondrial precursor; n=1; Brassica napus|Rep:
Chaperonin CPN60, mitochondrial precursor - Brassica
napus (Rape), partial (15%)
Length = 702
Score = 200 bits (101), Expect = 2e-50
Identities = 188/215 (87%), Gaps = 4/215 (1%)
Strand = Plus / Plus
Query: 146 agggtgttgaagagcttgctgatgcagtccaagtaaccatgggccct---aagggccgca 202
||||||||||||||||| ||||||| | | |||||||||| || ||| ||||| |||
Sbjct: 131 agggtgttgaagagcttactgatgctgccaaagtaaccattggtcctcctaaggggagca 190
Query: 203 atgtggtgattgagcaaagttttggtgcccctaaagtgacaaaagatggagtaactgttg 262
||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 191 atgtggtgattgagctaagttttggtgctcctaaagtgaccaaagatggagtgactgttg 250
Query: 263 ccaagagcattgaattcaaggataaagtcaagaatgtaggtgccagtcttgtaaagcagg 322
| ||||||||||||||||||| |||||| || ||||| ||||||||||| | ||| |||
Sbjct: 251 caaagagcattgaattcaagggtaaagttaa-aatgttagtgccagtcttattaagaagg 309
Query: 323 ttgcaaatgccaccaatgatgtggctggtgatgga 357
|||||||||| | ||||||||| ||||||||||||
Sbjct: 310 ttgcaaatgcaaacaatgatgtagctggtgatgga 344
Score = 123 bits (62), Expect = 4e-27
Identities = 104/118 (88%)
Strand = Plus / Plus
Query: 646 aatgagttggaagttgttgaaggcatgaagcttgacaggggctacatttctccatatttc 705
|||||| ||||||| |||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 361 aatgagctggaagtagttgaaggaatgaagcctgacaggggctacatatctccttatttc 420
Query: 706 ataactaaccagaagaaccagaaatgtgaacttgaagatcctctcattataatccatg 763
||||| || ||||||||||||||| ||||||| || ||| |||||||| |||| ||||
Sbjct: 421 ataacaaatcagaagaaccagaaacgtgaactggaggattctctcattctaattcatg 478
>gnl|LJGI|FS354479 similar to UniRef100_A6YQS1 Cluster: 60 kDa chaperonin; n=2; Bacillus
megaterium|Rep: 60 kDa chaperonin - Bacillus megaterium,
partial (6%)
Length = 716
Score = 121 bits (61), Expect = 2e-26
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 1161 cacttcagattatgacaaggaaaaattacaagaaagattagccaaactttctgggggtgt 1220
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 283 cacttcagattgtgacaaggaaaaattacaagaaagattagccaagatttctgggggtgt 224
Query: 1221 tgcagtgcttaag 1233
|||||||||||||
Sbjct: 223 tgcagtgcttaag 211
>gnl|LJGI|TC58967 homologue to UniRef100_A2A1E8 Cluster: Nucleoporin; n=1; Lotus
japonicus|Rep: Nucleoporin - Lotus japonicus, partial
(23%)
Length = 1122
Score = 121 bits (61), Expect = 2e-26
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1161 cacttcagattatgacaaggaaaaattacaagaaagattagccaaactttctgggggtgt 1220
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 942 cacttcagattatgacaaggaaaaattacaagaaagattagccaagatttctgggggtgt 1001
Query: 1221 tgcagtgcttaag 1233
|||| ||||||||
Sbjct: 1002 tgcactgcttaag 1014
>gnl|LJGI|FS348619 homologue to UniRef100_A2A1E8 Cluster: Nucleoporin; n=1; Lotus
japonicus|Rep: Nucleoporin - Lotus japonicus, partial
(15%)
Length = 637
Score = 109 bits (55), Expect = 6e-23
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 1167 agattatgacaaggaaaaattacaagaaagattagccaaactttctgggggtgttgcagt 1226
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 219 agattatgacaaggaaaaattacaagaaagattagccaagatttctgggggtgttgcact 160
Query: 1227 gcttaag 1233
|||||||
Sbjct: 159 gcttaag 153
>gnl|LJGI|FS332320 similar to UniRef100_Q1RSH3 Cluster: GroEL-like chaperone, ATPase;
n=1; Medicago truncatula|Rep: GroEL-like chaperone,
ATPase - Medicago truncatula (Barrel medic), partial
(5%)
Length = 779
Score = 99.6 bits (50), Expect = 6e-20
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 826 agacctctattgattgtggcagaggatgtggaaagtgaagccctggcaactcttattcta 885
|||||| |||||||||||| |||||||| |||||||| |||| | |||||||||||||
Sbjct: 442 agacctttattgattgtggttgaggatgtcgaaagtgacacccttgtaactcttattcta 501
Query: 886 aataagcttcgtgctggaatcaaggt 911
|||||||||| |||||||||||||||
Sbjct: 502 aataagcttcatgctggaatcaaggt 527
>gnl|LJGI|TC62942 similar to UniRef100_Q93ZM7 Cluster: Chaperonin CPN60-like 2,
mitochondrial precursor; n=2; Brassicaceae|Rep:
Chaperonin CPN60-like 2, mitochondrial precursor -
Arabidopsis thaliana (Mouse-ear cress), partial (55%)
Length = 1212
Score = 67.9 bits (34), Expect = 2e-10
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 490 agcagagcacgaatgattagtacttctgaagaaatagctcaggttgggacaatatctgct 549
||||||||| |||||| || || ||||||| ||| | |||||||| || |||||||||
Sbjct: 544 agcagagcagtaatgataagcacacctgaagagataacccaggttggaaccatatctgct 603
Query: 550 aatggggagagagagattggtgaattaattgcaaaagctatggagaaagt 599
||||||||| | || ||||| ||||| || |||| ||| |||||||||||
Sbjct: 604 aatggggagcgtgaaattggagaattgatagcaagagcaatggagaaagt 653
Score = 61.9 bits (31), Expect = 1e-08
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 649 gagttggaagttgttgaaggcatgaagcttgacaggggctacatttctccatatttcata 708
||||||||||| || ||||| |||||||| | || |||||||| ||||| ||||| ||
Sbjct: 700 gagttggaagtggtagaaggaatgaagctagctagaggctacatatctccttattttatt 759
Query: 709 actaaccagaagaaccagaaatgtgaa 735
||| | ||||||| |||||||||||||
Sbjct: 760 actgatcagaagacccagaaatgtgaa 786