Miyakogusa Predicted Gene

Lj5g3v1681450.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1681450.1 tr|Q7XRU6|Q7XRU6_ORYSJ OSJNBa0055C08.12 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0055C08.12
,45.61,3e-18,GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE
1,NULL,CUFF.55698.1
         (723 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73901 similar to UniRef100_A7PB20 Cluster: Chromosome...  1417   0.0  
gnl|LJGI|TC78085 similar to UniRef100_A7PB20 Cluster: Chromosome...   710   0.0  
gnl|LJGI|TC73412 homologue to UniRef100_A7PB20 Cluster: Chromoso...   549   e-156
gnl|LJGI|AV764861                                                     383   e-105
gnl|LJGI|DC595479 homologue to UniRef100_A7PB20 Cluster: Chromos...   264   7e-70
gnl|LJGI|AV773927                                                     107   1e-22

>gnl|LJGI|TC73901 similar to UniRef100_A7PB20 Cluster: Chromosome chr16 scaffold_10,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr16 scaffold_10, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (94%)
          Length = 1471

 Score = 1417 bits (715), Expect = 0.0
 Identities = 721/723 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    atggttcgacccggaaacccaatggagctccagatggcgtaccaggacgcttggcgggtc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  atggttcgacccggaaacccaatggagctccagatggcgtaccaggacgcttggcgggtc 528

                                                                        
Query: 61   tgccatccggatttcaagcgacccttttcttctctcgaagatgcctgcgagagattattg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  tgccatccggatttcaagcgacccttttcttctctcgaagatgcctgcgagagattattg 588

                                                                        
Query: 121  ccatatcatgttgtggcagactatgaagcagaagaggatgataggatccttgattctgac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  ccatatcatgttgtggcagactatgaagcagaagaggatgataggatccttgattctgac 648

                                                                        
Query: 181  accactggccaagtgctttcaaggtcccagcagtgggataataatattgctgctaaaatt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  accactggccaagtgctttcaaggtcccagcagtgggataataatattgctgctaaaatt 708

                                                                        
Query: 241  gctgagtttacagcaacttttgagaaacaagcacttgccttcaacataatatcccaaaag 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  gctgagtttacagcaacttttgagaaacaagcacttgccttcaacataatatcccaaaag 768

                                                                        
Query: 301  agaaacttgggtgaattccggtctgaggagagattgatgattgaacaggcacttctccaa 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  agaaacttgggtgaattccggtctgaggagagattgatgattgaacaggcacttctccaa 828

                                                                        
Query: 361  gaagaaaagcgagctctgatggccggtcgtgaagcacatgaggctaaacttcggatggcg 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 829  gaagaaaagcgagctctgatggccggtcgtgaagcacatgaggctaaacttcggatggca 888

                                                                        
Query: 421  gcaatgtatcaagctgagcaggcccgggcagaatcacactctcatgctgaaatgatgtcg 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  gcaatgtatcaagctgagcaggcccgggcagaatcacactctcatgctgaaatgatgtcg 948

                                                                        
Query: 481  cgagcccccataagagggagtgcacttgggtcccaaggcagtggtgatatgatgggccat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  cgagcccccataagagggagtgcacttgggtcccaaggcagtggtgatatgatgggccat 1008

                                                                        
Query: 541  gacatgggagagcaggatcagggaggtcacccaggtgatatgatgaatggatgggggaac 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 gacatgggagagcaggatcagggaggtcacccaggtgatatgatgaatggatgggggaac 1068

                                                                        
Query: 601  aatgcacacagagaagagaaggagccatctgaggatttcttgaatgatgaagctgagaat 660
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 aatgcacagagagaagagaaggagccatctgaggatttcttgaatgatgaagctgagaat 1128

                                                                        
Query: 661  ggagacacaggcacacaggatggttggcgtgaagttggtgaatttgatttgaatgctagg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 ggagacacaggcacacaggatggttggcgtgaagttggtgaatttgatttgaatgctagg 1188

               
Query: 721  tga 723
            |||
Sbjct: 1189 tga 1191


>gnl|LJGI|TC78085 similar to UniRef100_A7PB20 Cluster: Chromosome chr16 scaffold_10,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_10, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (90%)
          Length = 1322

 Score =  710 bits (358), Expect = 0.0
 Identities = 373/378 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttcgacccggaaacccaatggagctccagatggcgtaccaggacgcttggcgggtc 60
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 435 atggttcgacccgggaacccaatggagcttcagatggcgtaccaggacgcttggcgggtc 494

                                                                       
Query: 61  tgccatccggatttcaagcgacccttttcttctctcgaagatgcctgcgagagattattg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 495 tgccatccggatttcaagcgacccttttcttctcttgaagatgcctgcgagagattattg 554

                                                                       
Query: 121 ccatatcatgttgtggcagactatgaagcagaagaggatgataggatccttgattctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 555 ccatatcatgttgtggcagactatgaagcagaagaggatgataggatccttgactctgac 614

                                                                       
Query: 181 accactggccaagtgctttcaaggtcccagcagtgggataataatattgctgctaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 accactggccaagtgctttcaaggtcccagcagtgggataataatattgctgctaaaatt 674

                                                                       
Query: 241 gctgagtttacagcaacttttgagaaacaagcacttgccttcaacataatatcccaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gctgagtttacagcaacttttgagaaacaagcacttgccttcaacataatatcccaaaag 734

                                                                       
Query: 301 agaaacttgggtgaattccggtctgaggagagattgatgattgaacaggcacttctccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agaaacttgggtgaattccggtctgaggagagattgatgattgaacaggcacttctccaa 794

                             
Query: 361 gaagaaaagcgagctctg 378
           |||||||| |||||||||
Sbjct: 795 gaagaaaaacgagctctg 812



 Score =  543 bits (274), Expect = e-154
 Identities = 325/341 (95%), Gaps = 2/341 (0%)
 Strand = Plus / Plus

                                                                        
Query: 385  ggtcgtgaagcacatgaggctaaacttcggatggcggcaatgtatcaagctgagcaggcc 444
            ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 852  ggtcgtgaagcccatgaggctaaactccggatggcggccatgtatcaagctgagcaggcc 911

                                                                        
Query: 445  cgggcagaatcacactctcatgctgaaatgatgtcgcgagcccccataagagggagtgca 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  cgggcagaatcacactctcatgctgaaatgatgtcgcgagcccccataagagggagtgca 971

                                                                        
Query: 505  cttgggtcccaaggcagtggtgatatgatgggccatgacatgggagagcaggatcaggga 564
            ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 972  cttgggtcccatggccgtggtgacatgatgggccatgacatgggagagcaggatcaggga 1031

                                                                        
Query: 565  ggtcacccaggtgatatgatgaatggatgggggaacaatgcacacagagaagagaaggag 624
            ||| |||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||
Sbjct: 1032 ggtaacccaggtgatatgatgaatggatggggaaaccatgcacagagagaagaaaaggag 1091

                                                                        
Query: 625  ccatctgaggatttcttgaatgatgaagctgagaatggagacacaggcacacaggatggt 684
            |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1092 ccatctgaggatttcttgaatgatgaagctgagaatggagaccccggcacacaggatggt 1151

                                                     
Query: 685  tggcgtgaag--ttggtgaatttgatttgaatgctaggtga 723
            ||||||||||  | |||||||||||||||||||||||||||
Sbjct: 1152 tggcgtgaagtatcggtgaatttgatttgaatgctaggtga 1192


>gnl|LJGI|TC73412 homologue to UniRef100_A7PB20 Cluster: Chromosome chr16
           scaffold_10, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr16 scaffold_10, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (38%)
          Length = 685

 Score =  549 bits (277), Expect = e-156
 Identities = 292/297 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttcgacccggaaacccaatggagctccagatggcgtaccaggacgcttggcgggtc 60
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 389 atggttcgacccgggaacccaatggagcttcagatggcgtaccaggacgcttggcgggtc 448

                                                                       
Query: 61  tgccatccggatttcaagcgacccttttcttctctcgaagatgcctgcgagagattattg 120
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 449 tgccatccagatttcaagcgacccttttcttctcttgaagatgcctgcgagagattattg 508

                                                                       
Query: 121 ccatatcatgttgtggcagactatgaagcagaagaggatgataggatccttgattctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 509 ccatatcatgttgtggcagactatgaagcagaagaggatgataggatccttgactctgac 568

                                                                       
Query: 181 accactggccaagtgctttcaaggtcccagcagtgggataataatattgctgctaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 accactggccaagtgctttcaaggtcccagcagtgggataataatattgctgctaaaatt 628

                                                                    
Query: 241 gctgagtttacagcaacttttgagaaacaagcacttgccttcaacataatatcccaa 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gctgagtttacagcaacttttgagaaacaagcacttgccttcaacataatatcccaa 685


>gnl|LJGI|AV764861 
          Length = 462

 Score =  383 bits (193), Expect = e-105
 Identities = 307/345 (88%)
 Strand = Plus / Minus

                                                                       
Query: 379 atggccggtcgtgaagcacatgaggctaaacttcggatggcggcaatgtatcaagctgag 438
           ||||||||||||||||||||  ||| |||| |||||||||| ||||||||||||| ||||
Sbjct: 439 atggccggtcgtgaagcacaaaaggttaaatttcggatggcagcaatgtatcaagttgag 380

                                                                       
Query: 439 caggcccgggcagaatcacactctcatgctgaaatgatgtcgcgagcccccataagaggg 498
           ||||||||||||||||||| || ||||  |||||||||||||||||||||| ||| ||||
Sbjct: 379 caggcccgggcagaatcaccctttcattttgaaatgatgtcgcgagcccccctaaaaggg 320

                                                                       
Query: 499 agtgcacttgggtcccaaggcagtggtgatatgatgggccatgacatgggagagcaggat 558
           ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct: 319 agtgcacttgggtcccaagccagtggtgatataatgggccatgccatgggagagcaggat 260

                                                                       
Query: 559 cagggaggtcacccaggtgatatgatgaatggatgggggaacaatgcacacagagaagag 618
           |||||||||| ||| |||||||| || ||||||||||||  |||||| | || | || | 
Sbjct: 259 cagggaggtccccccggtgatattattaatggatggggggccaatgcccccaaaaaaaaa 200

                                                                       
Query: 619 aaggagccatctgaggatttcttgaatgatgaagctgagaatggagacacaggcacacag 678
           |||||||| ||||||||||| || ||| ||||||||||||||||| || ||||| | |||
Sbjct: 199 aaggagccctctgaggatttttttaattatgaagctgagaatggaaacccaggcccccag 140

                                                        
Query: 679 gatggttggcgtgaagttggtgaatttgatttgaatgctaggtga 723
            |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 139 aatggttggggtgaagttggtgaattttatttgaatgctaggtga 95


>gnl|LJGI|DC595479 homologue to UniRef100_A7PB20 Cluster: Chromosome chr16
           scaffold_10, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr16 scaffold_10, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (18%)
          Length = 292

 Score =  264 bits (133), Expect = 7e-70
 Identities = 145/149 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttcgacccggaaacccaatggagctccagatggcgtaccaggacgcttggcgggtc 60
           ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 144 atggttccacccgggaacccaatggagcttcagatggcgtaccaggacgcttggcgggtc 203

                                                                       
Query: 61  tgccatccggatttcaagcgacccttttcttctctcgaagatgcctgcgagagattattg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 tgccatccggatttcaagcgacccttttcttctcttgaagatgcctgcgagagattattg 263

                                        
Query: 121 ccatatcatgttgtggcagactatgaagc 149
           |||||||||||||||||||||||||||||
Sbjct: 264 ccatatcatgttgtggcagactatgaagc 292


>gnl|LJGI|AV773927 
          Length = 219

 Score =  107 bits (54), Expect = 1e-22
 Identities = 76/82 (92%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                       
Query: 643 aatgatgaagctgagaatggagacacaggcacacaggatggttggcg-tgaagttggtga 701
           |||||||||||||||||||||||| | ||||| | || ||||||||| ||||||||||||
Sbjct: 219 aatgatgaagctgagaatggagaccccggcaccccggctggttggcggtgaagttggtga 160

                                 
Query: 702 atttgatttgaatgctaggtga 723
           ||||||||||||||||||||||
Sbjct: 159 atttgatttgaatgctaggtga 138