Miyakogusa Predicted Gene
- Lj5g3v1671380.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1671380.1 tr|A9T2K5|A9T2K5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_167707,69.32,5e-19,zf-U1,Zinc finger, U1-C type;
ZF_MATRIN,Zinc finger, C2H2-type matrin; seg,NULL; C2H2 and C2HC zinc
,CUFF.55692.1
(633 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69099 similar to UniRef100_Q84VV2 Cluster: At4g03120;... 729 0.0
gnl|LJGI|DC594726 similar to UniRef100_Q84VV2 Cluster: At4g03120... 62 4e-09
>gnl|LJGI|TC69099 similar to UniRef100_Q84VV2 Cluster: At4g03120; n=1; Arabidopsis
thaliana|Rep: At4g03120 - Arabidopsis thaliana
(Mouse-ear cress), partial (42%)
Length = 1239
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Plus
Query: 1 atgcctcggtactactgtgactactgcgatacctatttgactcacgattctccatctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atgcctcggtactactgtgactactgcgatacctatttgactcacgattctccatctgtt 255
Query: 61 aggaagcagcataactctggttacaaacacaaggcaaatgtgaggaactactaccagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aggaagcagcataactctggttacaaacacaaggcaaatgtgaggaactactaccagcag 315
Query: 121 tttgaagagcagcaaacgcaaagtttaattgatcagaggatcaaagagcatctcgggcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttgaagagcagcaaacgcaaagtttaattgatcagaggatcaaagagcatctcgggcaa 375
Query: 181 gctgctgcgtttcagcaggttggggtggcttataatcatctaatggttccgaggccgggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gctgctgcgtttcagcaggttggggtggcttataatcatctaatggttccgaggccgggt 435
Query: 241 ggtcctcctttattgccaatgccgcagccaagatttcctatgcctggaaatgtgcaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggtcctcctttattgccaatgccgcagccaagatttcctatgcctggaaatgtgcaaatg 495
Query: 301 cctggaggtcaaccactaatgccggggatgagacctctgatgcccttgcctagacctgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cctggaggtcaaccactaatgccggggatgagacctctgatgcccttgcctagacctgtt 555
Query: 361 cctggtgc 368
||||||||
Sbjct: 556 cctggtgc 563
Score = 418 bits (211), Expect = e-116
Identities = 217/219 (99%)
Strand = Plus / Plus
Query: 415 cctggtgctccccaggtaccaggtcaactaaatgccataccgaggcccccttcattcgca 474
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cctggtgctccccatgtaccaggtcaactaaatgccataccgaggcccccttcattcgca 615
Query: 475 cccccgacaacagctcctggaagcactgccgctcccgcttccaatggtgctccctctatg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cccccgacaacagctcctggaagcactgccgctcccgcttccaatggtgctccctctatg 675
Query: 535 gtatcatcagcaatgtatcaacctaatccatcagcaccatcttctggaggctatgataac 594
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 676 gtatcatcagcaatgtatcaacctaatccatcagcaccatcatctggaggctatgataac 735
Query: 595 tacaatgccaatgctcaagcacctgatggcaatcactga 633
|||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tacaatgccaatgctcaagcacctgatggcaatcactga 774
>gnl|LJGI|DC594726 similar to UniRef100_Q84VV2 Cluster: At4g03120; n=1; Arabidopsis
thaliana|Rep: At4g03120 - Arabidopsis thaliana
(Mouse-ear cress), partial (11%)
Length = 448
Score = 61.9 bits (31), Expect = 4e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 8 ggtactactgtgactactgcgatacctatttgactcacgattctccatctgttaggaag 66
||||||| ||||| ||| ||||||||||||||| |||||||||| |||||| ||||||
Sbjct: 363 ggtactattgtgattaccacgatacctatttgacccacgattctctatctgtaaggaag 421