Miyakogusa Predicted Gene
- Lj5g3v1665190.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1665190.2 tr|D7LHC9|D7LHC9_ARALL Zinc finger (CCCH-type)
family protein OS=Arabidopsis lyrata subsp. lyrata GN,52.38,1e-18,CCCH
zinc finger,NULL; ZF_C3H1,Zinc finger, CCCH-type; no description,NULL;
zinc finger,Zinc finger,,CUFF.55677.2
(1056 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73416 similar to UniRef100_A7PTX9 Cluster: Chromosome... 1203 0.0
gnl|LJGI|BP056895 similar to UniRef100_A8MR17 Cluster: Uncharact... 250 2e-65
gnl|LJGI|TC68766 similar to UniRef100_A7NW62 Cluster: Chromosome... 88 1e-16
gnl|LJGI|TC76104 similar to UniRef100_A7NW62 Cluster: Chromosome... 86 5e-16
>gnl|LJGI|TC73416 similar to UniRef100_A7PTX9 Cluster: Chromosome chr7 scaffold_31,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_31, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 820
Score = 1203 bits (607), Expect = 0.0
Identities = 647/667 (97%)
Strand = Plus / Plus
Query: 1 atggacttgtacggtcggagccccgccgccaggaatggatccaacccggggaatcaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atggacttgtacggtcggagccccgccgccaggaatggatccaacccggggaatcaacct 213
Query: 61 gaatggcgttcaccggctaccgacactggccttgaagagtcgatgtggcatttgacgctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaatggcgttcaccggctaccgacactggccttgaagagtcgatgtggcatttgacgctc 273
Query: 121 nnnnnnnnnnnnnnnnnnnncgagcattacccggagcgacctggtgtggctaattgtgtc 180
||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggtggtggtggtggtggtggcgagcattacccggagcgacctggtgtggctaattgtgtc 333
Query: 181 tattacatgcggactggcttctgtggatatggtggcaggtgtcgttacaatcacccgcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tattacatgcggactggcttctgtggatatggtggcaggtgtcgttacaatcacccgcgt 393
Query: 241 gatcgtgctgcggttgctgcggcagtaagagctacaggggagtacccagaacgggcgggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gatcgtgctgcggttgctgcggcagtaagagctacaggggagtacccagaacgggcgggg 453
Query: 301 gagcctccatgtcagtattatttaaaaactggaacctgtaaattcggcgcatcctgtaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gagcctccatgtcagtattatttaaaaactggaacctgtaaattcggcgcatcctgtaga 513
Query: 361 ttccaccatcccaaacatggaggtggatatttaagccaagctccacttaatgtttatgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttccaccatcccaaacatggaggtggatatttaagccaagctccacttaatgtttatgga 573
Query: 421 tacccattgcgaccgggtgagaaagaatgctcctactatttgaaaacggggcaatgcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tacccattgcgaccgggtgagaaagaatgctcctactatttgaaaacggggcaatgcaaa 633
Query: 481 tttggtttaacttgtaaattccatcatcctcaacctgctggcacatcaatgccagcatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tttggtttaacttgtaaattccatcatcctcaacctgctggcacatcaatgccagcatct 693
Query: 541 gcgcctcaattttatccacaggtgcagtctcctacagttcctctgcctgaacagtatgga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gcgcctcaattttatccacaggtgcagtctcctacagttcctctgcctgaacagtatgga 753
Query: 601 ggagcttccacaagcttgagagtggctaggcctcctatgttgcctggttcatatgtacag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ggagcttccacaagcttgagagtggctaggcctcctatgttgcctggttcatatgtacag 813
Query: 661 ggggctt 667
|||||||
Sbjct: 814 ggggctt 820
>gnl|LJGI|BP056895 similar to UniRef100_A8MR17 Cluster: Uncharacterized protein
At2g47850.2; n=1; Arabidopsis thaliana|Rep:
Uncharacterized protein At2g47850.2 - Arabidopsis
thaliana (Mouse-ear cress), partial (8%)
Length = 445
Score = 250 bits (126), Expect = 2e-65
Identities = 129/130 (99%)
Strand = Plus / Minus
Query: 909 tgaacctgaatgccaatactatttgagaactggggattgtaaatttggattagcttgtcg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaacctgaatgccaatactatttgagaactggggattgtaaatttggattagcttgtcg 386
Query: 969 atatcatcatcctcgggaacgggttatggcacaaccacttcttagccccattggtcttcc 1028
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatcatcatcctcgggaacggtttatggcacaaccacttcttagccccattggtcttcc 326
Query: 1029 ttttcgtccg 1038
||||||||||
Sbjct: 325 ttttcgtccg 316
>gnl|LJGI|TC68766 similar to UniRef100_A7NW62 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (76%)
Length = 2580
Score = 87.7 bits (44), Expect = 1e-16
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 414 ttatggatacccattgcgaccgggtgagaaagaatgctcctactatttgaaaacggggca 473
||||||||| ||| | ||||||||||||||||| |||||||| ||| |||||||||| ||
Sbjct: 683 ttatggatatccaatacgaccgggtgagaaagagtgctcctattatgtgaaaacgggaca 742
Query: 474 atgcaaatttggtttaacttgtaaattccatcatcc 509
||| || || || |||||||||||||||||||||
Sbjct: 743 atgtaagttcagtgcaacttgtaaattccatcatcc 778
>gnl|LJGI|TC76104 similar to UniRef100_A7NW62 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 2368
Score = 85.7 bits (43), Expect = 5e-16
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 416 atggatacccattgcgaccgggtgagaaagaatgctcctactatttgaaaacggggcaat 475
||||||| ||||||||| |||| ||||||| || ||||| ||| ||||||| || ||||
Sbjct: 524 atggatatccattgcgaatgggtcagaaagagtgttcctattatgtgaaaactggacaat 583
Query: 476 gcaaatttggtttaacttgtaaattccatcatcctcaacctgc 518
|||| |||||| ||||||||||||||||||||| || |||||
Sbjct: 584 gcaagtttggtgcaacttgtaaattccatcatccacagcctgc 626