Miyakogusa Predicted Gene
- Lj5g3v1627970.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1627970.1 tr|G7IF63|G7IF63_MEDTR Zinc finger CCCH
domain-containing protein OS=Medicago truncatula
GN=MTR_1g08,77.78,0,seg,NULL; ATP-DEPENDENT RNA HELICASE,NULL; no
description,NULL; helicase superfamily c-terminal doma,CUFF.55651.1
(2784 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV410705 similar to UniRef100_A7Q0B7 Cluster: Chromosom... 656 0.0
gnl|LJGI|TC73897 weakly similar to UniRef100_A7Q0B7 Cluster: Chr... 634 0.0
gnl|LJGI|FS341816 similar to UniRef100_A7Q0B7 Cluster: Chromosom... 581 e-165
gnl|LJGI|BP041725 weakly similar to UniRef100_A7Q0B7 Cluster: Ch... 200 3e-50
>gnl|LJGI|AV410705 similar to UniRef100_A7Q0B7 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 333
Score = 656 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Plus
Query: 399 ggtagttgaatctcttgggataagctctgaattaatgcattcaaaagattcgcatggtct 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggtagttgaatctcttgggataagctctgaattaatgcattcaaaagattcgcatggtct 62
Query: 459 aaatccttccacagccaatgctcgaattaagtctgaactgcacacacttattcatgcact 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aaatccttccacagccaatgctcgaattaagtctgaactgcacacacttattcatgcact 122
Query: 519 ggtgttgcatattcatgtgaatgagccagatattgagaaaagcattctagttttccttcc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ggtgttgcatattcatgtgaatgagccagatattgagaaaagcattctagttttccttcc 182
Query: 579 aacctacaattcactggcacagcaatggcgccttctgaagccacttgaatcaacttttga 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aacctacaattcactggcacagcaatggcgccttctgaagccacttgaatcaacttttga 242
Query: 639 agttcatatcttacatcgtagcattgatactgaacaagctctcatggctatgaagatttc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agttcatatcttacatcgtagcattgatactgaacaagctctcatggctatgaagatttc 302
Query: 699 gaagacacatcgaaaggtaatattggctacc 729
|||||||||||||||||||||||||||||||
Sbjct: 303 gaagacacatcgaaaggtaatattggctacc 333
>gnl|LJGI|TC73897 weakly similar to UniRef100_A7Q0B7 Cluster: Chromosome chr7
scaffold_42, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr7 scaffold_42, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (11%)
Length = 634
Score = 634 bits (320), Expect = 0.0
Identities = 346/354 (97%), Gaps = 3/354 (0%)
Strand = Plus / Plus
Query: 2434 gatgatttggatggaaaaaagcagctcttgcagaacttctttgaatatctggccattcga 2493
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 1 gatgatttggatggaaaaaagcagctcttgcagaacttcttcgaatatctcgccattcga 60
Query: 2494 attctgggtgatgatttgcatgaggtgcaagttatcataaccatgaataatatcatattt 2553
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attctggctgatgatttgcatgaggtgcaagttatcataaccatgaataatatcatattt 120
Query: 2554 tcccaacttcaggtagaaaagttgggcagggagagtttctttatcctcacagagtccttt 2613
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccctacttcaggtagaaaagttgggcagggagagtttctttatcctcacagagtccttt 180
Query: 2614 gcttttgacgaaacaagctttggggaattac---atgtagttacccctaggaggccaatg 2670
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181 gcttttgacgaaacaagctttggggaattacatgatgtagttacccctaggaggccaatg 240
Query: 2671 ttgatatcaagggccacctcatatgtttttagcctgcttcctgccagtgacaaacatttc 2730
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgatatcaagggccacctcatatgtttttagcctgcttcctgccagtgacaaacatttc 300
Query: 2731 ggtgactacgctgctactatcaaaaagcaactgcatgaaattcaaacaaattaa 2784
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtgactacgctgctactatcaaaaagcaactgcatgaaattcaaacaaattaa 354
>gnl|LJGI|FS341816 similar to UniRef100_A7Q0B7 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 701
Score = 581 bits (293), Expect = e-165
Identities = 293/293 (100%)
Strand = Plus / Plus
Query: 1 atggttgcacaagctcgaaaatgtcaattgggagaagaagttggatatcatattggacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atggttgcacaagctcgaaaatgtcaattgggagaagaagttggatatcatattggacac 468
Query: 61 gaaaagaacttttcagctagttcaaagattgtttttaaaactgctggagtgttgttggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaaaagaacttttcagctagttcaaagattgtttttaaaactgctggagtgttgttggac 528
Query: 121 gaattgcaagaaaagggtatggctgcactgaagtacaaagctatcattcttgatgaagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattgcaagaaaagggtatggctgcactgaagtacaaagctatcattcttgatgaagta 588
Query: 181 catgaaagatcagtggagtctgatcttgtccttgtttgtgtgaagcagtttttgttaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 catgaaagatcagtggagtctgatcttgtccttgtttgtgtgaagcagtttttgttaaag 648
Query: 241 aacgacataagggtggttttgatgtctgcaactgctgatatttcgagatacag 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aacgacataagggtggttttgatgtctgcaactgctgatatttcgagatacag 701
>gnl|LJGI|BP041725 weakly similar to UniRef100_A7Q0B7 Cluster: Chromosome chr7
scaffold_42, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr7 scaffold_42, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (3%)
Length = 520
Score = 200 bits (101), Expect = 3e-50
Identities = 113/117 (96%)
Strand = Plus / Minus
Query: 2668 atgttgatatcaagggccacctcatatgtttttagcctgcttcctgccagtgacaaacat 2727
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 520 atgttgatatcaagggccacctcatatgtttttagcctgcttcctgccagtgaccaacat 461
Query: 2728 ttcggtgactacgctgctactatcaaaaagcaactgcatgaaattcaaacaaattaa 2784
|||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct: 460 ttcggtgactacgctgctactatccaaaagccactgcatgaaattcaaaccaattaa 404