Miyakogusa Predicted Gene

Lj5g3v1616850.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1616850.1 tr|Q9FSQ5|Q9FSQ5_ORYSA H0423H10.8 protein
OS=Oryza sativa GN=H0423H10.8 PE=4
SV=2,75,2e-19,CAMSAP_CH,Calmodulin-regulated spectrin-associated
protein, CH domain; MICROTUBULE-ASSOCIATED PROTEI,CUFF.55633.1
         (327 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS337031 similar to UniRef100_A7QEG4 Cluster: Chromosom...   317   2e-86
gnl|LJGI|BP042940                                                     165   2e-40
gnl|LJGI|TC62647 similar to UniRef100_A7QEG4 Cluster: Chromosome...   157   5e-38
gnl|LJGI|FS330395 similar to UniRef100_Q9DEU7 Cluster: Transcrip...    76   1e-13
gnl|LJGI|TC75343 similar to UniRef100_A7P2L3 Cluster: Chromosome...    62   2e-09

>gnl|LJGI|FS337031 similar to UniRef100_A7QEG4 Cluster: Chromosome chr1 scaffold_84,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_84, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (13%)
          Length = 552

 Score =  317 bits (160), Expect = 2e-86
 Identities = 160/160 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcttactaccttcatccttcggataatcttggtttgctcgcacattgaggaggctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atgcttactaccttcatccttcggataatcttggtttgctcgcacattgaggaggctgca 452

                                                                       
Query: 61  tccggtgatgtacaatgccagatgatagacatgacgcatccaagagttgttccaatgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tccggtgatgtacaatgccagatgatagacatgacgcatccaagagttgttccaatgcac 512

                                                   
Query: 121 aaggtgaattttgatgcaaagatggagtatgataagatcc 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaggtgaattttgatgcaaagatggagtatgataagatcc 552


>gnl|LJGI|BP042940 
          Length = 432

 Score =  165 bits (83), Expect = 2e-40
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcttactaccttcatccttcggataatcttggtttgctcgcacattgaggaggctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atgcttactaccttcatccttcggataatcttggtttgctcgcacattgaggaggctgca 409

                                  
Query: 61  tccggtgatgtacaatgccagat 83
           |||||||||||||||||||||||
Sbjct: 410 tccggtgatgtacaatgccagat 432


>gnl|LJGI|TC62647 similar to UniRef100_A7QEG4 Cluster: Chromosome chr1 scaffold_84,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_84, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (50%)
          Length = 815

 Score =  157 bits (79), Expect = 5e-38
 Identities = 143/163 (87%), Gaps = 1/163 (0%)
 Strand = Plus / Plus

                                                                       
Query: 45  cattgaggaggctgcatccggtgatgtacaatgccagatgatagacatgacgcatccaag 104
           |||||||||||| ||||| ||||  ||||||||||||||||| ||||||||   |||| |
Sbjct: 421 cattgaggaggcggcatctggtgccgtacaatgccagatgatggacatgacatttccagg 480

                                                                       
Query: 105 agttgttccaatgcacaaggtgaattttgatgcaaagatggagtatgataagatccagaa 164
            |||||||||||||||||||||||||| |||||||||   |||||||||| |||||| ||
Sbjct: 481 ggttgttccaatgcacaaggtgaatttcgatgcaaagtcagagtatgatatgatccaaaa 540

                                                      
Query: 165 ttacaaaattctgca-ggacgtgttcaacaagctgaaaattga 206
           ||||||| ||||||| ||| ||||||||||| |||||||||||
Sbjct: 541 ttacaaagttctgcagggaagtgttcaacaaactgaaaattga 583


>gnl|LJGI|FS330395 similar to UniRef100_Q9DEU7 Cluster: Transcription factor Her-8b;
           n=1; Danio rerio|Rep: Transcription factor Her-8b -
           Danio rerio (Zebrafish) (Brachydanio rerio), partial
           (9%)
          Length = 748

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                             
Query: 5   ttactaccttcatccttcggataatcttggtttgctcgcacattgaggag 54
           |||| ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 506 ttaccaccttcatccttcggataatcctggtttgctcgcgcattgaggag 555


>gnl|LJGI|TC75343 similar to UniRef100_A7P2L3 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (19%)
          Length = 1178

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 5   ttactaccttcatccttcggataatcttggtttgctcgcacattgag 51
           |||| |||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 253 ttaccaccttcatccttcgaataatcctggtttgctcgcgcattgag 299