Miyakogusa Predicted Gene
- Lj5g3v1601910.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1601910.1 tr|G7L6M8|G7L6M8_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g078900 PE=4 SV=1,32.8,0.026,seg,NULL; FBOX,F-box
domain, cyclin-like; no description,NULL; F-box-like,NULL; SUBFAMILY
NOT NAMED,,CUFF.55595.1
(1182 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63955 1068 0.0
gnl|LJGI|DC595381 weakly similar to UniRef100_Q2HS67 Cluster: Cy... 58 1e-07
gnl|LJGI|TC76533 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 56 5e-07
gnl|LJGI|TC79482 weakly similar to UniRef100_A7Q9Q9 Cluster: Chr... 54 2e-06
gnl|LJGI|TC74128 similar to UniRef100_A7Q9Q9 Cluster: Chromosome... 54 2e-06
gnl|LJGI|TC67010 weakly similar to UniRef100_A4UV34 Cluster: F-b... 54 2e-06
>gnl|LJGI|TC63955
Length = 698
Score = 1068 bits (539), Expect = 0.0
Identities = 539/539 (100%)
Strand = Plus / Plus
Query: 644 gcattcaacctttgccttcatttcctaatctaggacaagggccacaagatggagtttact 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcattcaacctttgccttcatttcctaatctaggacaagggccacaagatggagtttact 60
Query: 704 ttagtggtagtcttaattgggttgcttgtgatgaatggggaagtgtccagttccatatag 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttagtggtagtcttaattgggttgcttgtgatgaatggggaagtgtccagttccatatag 120
Query: 764 tttcacttgatttagggaaggagacgtacacgcggttggctatgcctggtgatcacatcg 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttcacttgatttagggaaggagacgtacacgcggttggctatgcctggtgatcacatcg 180
Query: 824 gtactgagccacttcttggggttttaaggggtttcttgtgtctttctgatgattatgagc 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtactgagccacttcttggggttttaaggggtttcttgtgtctttctgatgattatgagc 240
Query: 884 agactcattttgttatttggcgaatgaacgagtttggagttgggggatcctggactcgtt 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agactcattttgttatttggcgaatgaacgagtttggagttgggggatcctggactcgtt 300
Query: 944 tggtgaacgctagttatgattatcttgacacttctggttacccgaattttcatcttggga 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggtgaacgctagttatgattatcttgacacttctggttacccgaattttcatcttggga 360
Query: 1004 tgaatgtattgtgcatgtctgaaaatgatgatatcctgatggtgtcatatttagatcagt 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaatgtattgtgcatgtctgaaaatgatgatatcctgatggtgtcatatttagatcagt 420
Query: 1064 cccaagcaattctatacaaccggagagataatagtttacagcgtatagaatttccgaaca 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cccaagcaattctatacaaccggagagataatagtttacagcgtatagaatttccgaaca 480
Query: 1124 atatatcctttggctgcaatgtcaagtattacctcgaaagcttaatttcaccttgttga 1182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atatatcctttggctgcaatgtcaagtattacctcgaaagcttaatttcaccttgttga 539
>gnl|LJGI|DC595381 weakly similar to UniRef100_Q2HS67 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 408
Score = 58.0 bits (29), Expect = 1e-07
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 169 tcctggaattccctcatctcagatccccaattcgcca 205
|||||||||||||||||||| |||||| |||||||||
Sbjct: 185 tcctggaattccctcatctccgatcccaaattcgcca 221
>gnl|LJGI|TC76533 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 474
Score = 56.0 bits (28), Expect = 5e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 163 tgcaaatcctggaattccctcatctcagatccccaattcgccaa 206
||||||||||||||||| |||||||| |||||| |||| |||||
Sbjct: 244 tgcaaatcctggaattctctcatctccgatcccaaatttgccaa 287
>gnl|LJGI|TC79482 weakly similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5
scaffold_67, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_67, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 551
Score = 54.0 bits (27), Expect = 2e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 542 ttgggtttggttatgattgtttaactgatacatacaaggtggt 584
||||||||||||||||||||| || ||| || |||||||||||
Sbjct: 325 ttgggtttggttatgattgttcaagtgacacctacaaggtggt 367
>gnl|LJGI|TC74128 similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 501
Score = 54.0 bits (27), Expect = 2e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 159 cgtctgcaaatcctggaattccctcatctcagatccccaattcgcca 205
||||||||| |||||||||||||| || || |||||| |||||||||
Sbjct: 252 cgtctgcaagtcctggaattccctgatttctgatcccaaattcgcca 298
>gnl|LJGI|TC67010 weakly similar to UniRef100_A4UV34 Cluster: F-box domain-containing
protein; n=2; Solanum|Rep: F-box domain-containing
protein - Solanum tuberosum (Potato), partial (15%)
Length = 1074
Score = 54.0 bits (27), Expect = 2e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 542 ttgggtttggttatgattgtttaactgatacatacaaggtggt 584
||||||||||||||||||||| || ||| || |||||||||||
Sbjct: 496 ttgggtttggttatgattgttcaagtgacacctacaaggtggt 538