Miyakogusa Predicted Gene

Lj5g3v1600670.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1600670.1 Non Chatacterized Hit- tr|C5WMI2|C5WMI2_SORBI
Putative uncharacterized protein Sb01g037590
OS=Sorghu,35.27,2e-17,coiled-coil,NULL; seg,NULL; DUF4228,Protein of
unknown function DUF4228,CUFF.55571.1
         (619 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67980 similar to UniRef100_A7Q0L4 Cluster: Chromosome...   125   3e-28

>gnl|LJGI|TC67980 similar to UniRef100_A7Q0L4 Cluster: Chromosome chr7 scaffold_42,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_42, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (38%)
          Length = 1069

 Score =  125 bits (63), Expect = 3e-28
 Identities = 69/71 (97%)
 Strand = Plus / Plus

                                                                       
Query: 499 agtaggcagttgtcagggaaggagtggaagcctagcttggacaccattaaggagaagaat 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 657 agtaggcagttgtcagggaaggagtggaagcctagcttggacaccattaaggagaagaag 716

                      
Query: 559 attgagaaaaa 569
           ||| |||||||
Sbjct: 717 attaagaaaaa 727



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 74  aatttgaccaaccggtaatggtagcagagctcatgttggagcaccctcaacaagtagtgg 133
           |||||||||||||  |||  || |||||||||||| | |||||||| ||||| |||||||
Sbjct: 262 aatttgaccaacctctaacagtggcagagctcatgctagagcacccacaacaggtagtgg 321

                  
Query: 134 ttgagtt 140
           | |||||
Sbjct: 322 tggagtt 328



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                       
Query: 156 ccagagaaggccaactccattgcctgctgacaagaagctggacatgaacaaggtctattt 215
           ||||| ||| ||||| |||||||| |||||||||||||| || ||||| ||    ||| |
Sbjct: 347 ccagaaaagaccaacaccattgccagctgacaagaagctagagatgaagaaaacatatgt 406

                                      
Query: 216 gatggttccgatgaagcgaggcaagcc 242
            ||| |||||||||||||||| |||||
Sbjct: 407 aatgcttccgatgaagcgagggaagcc 433