Miyakogusa Predicted Gene
- Lj5g3v1533480.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1533480.1 tr|Q68HK1|Q68HK1_PEA Phytochrome OS=Pisum sativum
GN=PHYA PE=3 SV=1,88.97,0,Domain present in phytochromes and
cGMP-spe,GAF domain; PAS domain,PAS domain; His Kinase A
(phospho,CUFF.55479.1
(3375 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78720 similar to UniRef100_P42500 Cluster: Phytochrom... 2157 0.0
gnl|LJGI|TC82545 similar to UniRef100_P93673 Cluster: Phytochrom... 1497 0.0
gnl|LJGI|AV769574 similar to UniRef100_P15001 Cluster: Phytochro... 551 e-155
gnl|LJGI|TC65170 similar to UniRef100_P15001 Cluster: Phytochrom... 262 1e-68
gnl|LJGI|BP063585 similar to UniRef100_P42500 Cluster: Phytochro... 155 2e-36
>gnl|LJGI|TC78720 similar to UniRef100_P42500 Cluster: Phytochrome A; n=1; Glycine
max|Rep: Phytochrome A - Glycine max (Soybean), partial
(32%)
Length = 1357
Score = 2157 bits (1088), Expect = 0.0
Identities = 1091/1092 (99%)
Strand = Plus / Plus
Query: 2284 atccccccgatatttggcacagatgaatttggctggtgttgtgagtggaatccagccatg 2343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 atccccccgatatttggcacagatgaatttggctggtgttgtgagtggaatccagccatg 63
Query: 2344 acaaagttaactggatggaagcgagaagaggtgatggataaaatgcttttaggagaagtt 2403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 acaaagttaactggatggaagcgagaagaggtgatggataaaatgcttttaggagaagtt 123
Query: 2404 tttgggacacacatggctgcttgtcgtctaaagaatcaagaagcttttgttaattttggc 2463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tttgggacacacatggctgcttgtcgtctaaagaatcaagaagcttttgttaattttggc 183
Query: 2464 attgtgcttaataaagccatgactggttcggaaacggagaaggtcggcttcggtttcttt 2523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 attgtgcttaataaagccatgactggttcggaaacggagaaggtcggcttcggtttcttt 243
Query: 2524 gctcggagtggcaagtatgtagaatgccttctttctgtgagtaagaaattggacgtagaa 2583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gctcggagtggcaagtatgtagaatgccttctttctgtgagtaagaaattggacgtagaa 303
Query: 2584 ggtctagttacaggggtcttctgcttcttgcagctagctagcccagagctgcaacaagca 2643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggtctagttacaggggtcttctgcttcttgcagctagctagcccagagctgcaacaagca 363
Query: 2644 ttacacattcagcacctatccgaacaaactgctctgaaaagactgaaggcattaacttat 2703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttacacattcagcacctatccgaacaaactgctctgaaaagactgaaggcattaacttat 423
Query: 2704 atgaaaaggcagatcaggaatccattgtctgggattgtattttcacggaaaacgttggag 2763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atgaaaaggcagatcaggaatccattgtctgggattgtattttcacggaaaacgttggag 483
Query: 2764 ggtactgatttgggaatagaacaaaaacgacttgtccatactagtgctcagtgccagcgc 2823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggtactgatttgggaatagaacaaaaacgacttgtccatactagtgctcagtgccagcgc 543
Query: 2824 cagcttagcaaaattctcgatgactcggatcttgacagcatcatggacggctacttggat 2883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cagcttagcaaaattctcgatgactcggatcttgacagcatcatggacggctacttggat 603
Query: 2884 cttgagatggctgaattcactctccaagatgtactgattacctccctaagtcaaatcatg 2943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cttgagatggctgaattcactctccaagatgtactgattacctccctaagtcaaatcatg 663
Query: 2944 gcaaggagtagtgcgagaggtatccgaatagtcaatgatgtcgctgaggagatcatggtg 3003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gcaaggagtagtgcgagaggtatccgaatagtcaatgatgtcgctgaggagatcatggtg 723
Query: 3004 gaaatcttatatggtgatagtcttaggcttcagcaggtcttagccgactttttactgatt 3063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaaatcttatatggtgatagtcttaggcttcagcaggtcttagccgactttttactgatt 783
Query: 3064 tccatcaattgtacaccaaatggaggtcaggttgttgttgcagcctctctaaccaaggaa 3123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tccatcaattgtacaccaaatggaggtcaggttgttgttgcagcctctctaaccaaggaa 843
Query: 3124 cagctagggaaatctgtccatcttgctaatttggagctcagcataacacatggcggtagc 3183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 cagctagggaaatctgtccatcttgctaatttggagctcagcataacacatggcggtagc 903
Query: 3184 ggggtgccggaagcattgctgaaccagatgtttggaaatgatgggctagaatcagaggag 3243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggggtgccggaagcattgctgaaccagatgtttggaaatgatgggctagaatcagaggag 963
Query: 3244 ggtattagcctgctcatcagcagaaagctgctaaagctcatgagtggagatgttcgttat 3303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 ggtattagcctgctcatcagcagaaagctgctaaagctcatgagtggagatgttcgttat 1023
Query: 3304 ctaagggaagcaggcaaatcatcgtttatcctatcggttgaacttgctgcagcacataag 3363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 ctaagggaagcaggccaatcatcgtttatcctatcggttgaacttgctgcagcacataag 1083
Query: 3364 ttgaaagcttaa 3375
||||||||||||
Sbjct: 1084 ttgaaagcttaa 1095
>gnl|LJGI|TC82545 similar to UniRef100_P93673 Cluster: Phytochrome type A; n=1;
Lathyrus sativus|Rep: Phytochrome type A - Lathyrus
sativus (Chickling vetch), partial (22%)
Length = 762
Score = 1497 bits (755), Expect = 0.0
Identities = 758/759 (99%)
Strand = Plus / Plus
Query: 669 tgatacaatggttcaagaagtttttgaactcacaggttatgatagggtgatggcttataa 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatacaatggttcaagaagtttttgaactcacaggttatgatagggtgatggcttataa 60
Query: 729 atttcatgaggatgatcatggagaggtgattgctgagataacaaagcccgggctagagcc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttcatgaggatgatcatggagaggtgattgctgagataacaaagcccgggctagagcc 120
Query: 789 atatctgggtttacactatccagccactgatattcctcaggcttcacgctttttatttat 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atatctgggtttacactatccagccactgatattcctcaggcttcacgctttttatttat 180
Query: 849 gaagaacaaggtccggatgatagttgattgtcatgcaaaacaagtgaaggttcttataga 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaagaacaaggtccggatgatagttgattgtcatgcaaaacaagtgaaggttcttataga 240
Query: 909 tgaaaaactcccatttgatttgactttgtgtggttcaaccttaagggctcctcacagttg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaaaaactcccatttgatttgactttgtgtggttcaaccttaagggctcctcacagttg 300
Query: 969 ccatttgcaatacatggcaaacatggattcaattgcttccctggttatggcagttgtagt 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccatttgcaatacatggcaaacatggattcaattgcttccctggttatggcagttgtagt 360
Query: 1029 caatgacaacgatgaagacggggatggttctgattcagttcagccacagaagagaaaaag 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caatgacaacgatgaagacggggatggttctgattcagttcagccacagaagagaaaaag 420
Query: 1089 actctggggtttggtagtttgccacaacacttctcctagatttgttccttttcctctaag 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 actctggggtttggtagtttgccacaacacttctcctagatttgttccttttcctctaag 480
Query: 1149 gtatgcttgtgaatttctggctcaagtgtttgccatccatgtgaacaaagaaatagaatt 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtatgcttgtgaatttctggctcaagtgtttgccatccatgtgaacaaagaaatagaatt 540
Query: 1209 agaatgtcagattcttgagaagaatatcctgcgcacccagacactcttgtgtgatatgct 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaatgtcagattcttgagaagaatatcctgcgcacccagacactcttgtgtgatatgct 600
Query: 1269 gatgcgagatgcgcccctaggcattctaacacagagtccaaatttaatggatctagtgaa 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gatgcgagatgcgcccctaggcattctaacacagagtccaaatttaatggatctagtgaa 660
Query: 1329 atgtgatggcgctgccctcttgtataaaaacaaggtatggatgttaggagtaacacctag 1388
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 661 atgtgatggcgctgccctcttgtataaaaacaaggtatggatgttaagagtaacacctag 720
Query: 1389 tgaactccatataagagacatagcttcatggctgtctaa 1427
|||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgaactccatataagagacatagcttcatggctgtctaa 759
>gnl|LJGI|AV769574 similar to UniRef100_P15001 Cluster: Phytochrome A; n=2; Pisum
sativum|Rep: Phytochrome A - Pisum sativum (Garden pea),
partial (8%)
Length = 526
Score = 551 bits (278), Expect = e-155
Identities = 285/286 (99%), Gaps = 1/286 (0%)
Strand = Plus / Plus
Query: 1 atgtcttcatcaaggcctagccaatcgtccaacaattcagggagatcaagacatagtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgtcttcatcaaggcctagccaatcgtccaacaattcagggagatcaagacatagtgct 300
Query: 61 agggttattgctcagaccactgtagatgcaaaaatccatgccaattttgaggagtctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agggttattgctcagaccactgtagatgcaaaaatccatgccaattttgaggagtctggt 360
Query: 121 agttccttcgactactccagttcggtacgtgcctccggtacggctgatgcagaccatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agttccttcgactactccagttcggtacgtgcctccggtacggctgatgcagaccatcaa 420
Query: 181 ccaaagtccaacaaagtaacaacagcttacctgcatcacatacagagaggcaagctgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccaaagtccaacaaagtaacaacagcttacctgcatcacatacagagaggcaagctgatc 480
Query: 241 cagcc-ttttggttgcttgctggccttagatgagaaaacatgcaag 285
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cagcctttttggttgcttgctggccttagatgagaaaacatgcaag 526
>gnl|LJGI|TC65170 similar to UniRef100_P15001 Cluster: Phytochrome A; n=2; Pisum
sativum|Rep: Phytochrome A - Pisum sativum (Garden pea),
partial (7%)
Length = 708
Score = 262 bits (132), Expect = 1e-68
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1 atgtcttcatcaaggcctagccaatcgtccaacaattcagggagatcaagacatagtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atgtcttcatcaaggcctagccaatcgtccaacaattcagggagatcaagacatagtgct 299
Query: 61 agggttattgctcagaccactgtagatgcaaaaatccatgccaattttgaggagtctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agggttattgctcagaccactgtagatgcaaaaatccatgccaattttgaggagtctggt 359
Query: 121 agttccttcgac 132
||||||||||||
Sbjct: 360 agttccttcgac 371
Score = 254 bits (128), Expect = 3e-66
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 3248 ttagcctgctcatcagcagaaagctgctaaagctcatgagtggagatgttcgttatctaa 3307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttagcctgctcatcagcagaaagctgctaaagctcatgagtggagatgttcgttatctaa 463
Query: 3308 gggaagcaggcaaatcatcgtttatcctatcggttgaacttgctgcagcacataagttga 3367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gggaagcaggcaaatcatcgtttatcctatcggttgaacttgctgcagcacataagttga 523
Query: 3368 aagcttaa 3375
||||||||
Sbjct: 524 aagcttaa 531
Score = 67.9 bits (34), Expect = 4e-10
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 172 gaccatcaaccaaagtccaacaaagtaacaacagctta 209
|||| |||||||||||||||||||||||||||||||||
Sbjct: 369 gaccgtcaaccaaagtccaacaaagtaacaacagctta 406
>gnl|LJGI|BP063585 similar to UniRef100_P42500 Cluster: Phytochrome A; n=1; Glycine
max|Rep: Phytochrome A - Glycine max (Soybean), partial
(3%)
Length = 382
Score = 155 bits (78), Expect = 2e-36
Identities = 126/138 (91%), Gaps = 3/138 (2%)
Strand = Plus / Minus
Query: 3239 aggagggtattagcctgctcatcagcagaaagctgctaaagctcatgagtggagatgttc 3298
||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 382 aggagggtattagccggctcatccgccgaaagctgctaaagctcatgagtggagatgttc 323
Query: 3299 gttat-ctaagggaagcaggcaaatcat-cgtttatcct-atcggttgaacttgctgcag 3355
| || ||||||||||| ||| |||||| || | ||||| ||||||||||||||||||||
Sbjct: 322 gggatgctaagggaagccggccaatcatgcggtgatcctgatcggttgaacttgctgcag 263
Query: 3356 cacataagttgaaagctt 3373
||||||||||||||||||
Sbjct: 262 cacataagttgaaagctt 245