Miyakogusa Predicted Gene
- Lj5g3v1533380.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1533380.1 tr|Q9W087|Q9W087_DROME CG2021 OS=Drosophila
melanogaster GN=CG2021 PE=2 SV=1,63.89,2e-19,no description,NULL;
LSM1,NULL; LSM,Ribonucleoprotein LSM domain; snRNP Sm
proteins,Ribonucleoprotei,CUFF.55445.1
(237 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV765798 similar to UniRef100_A7PAX0 Cluster: Chromosom... 470 e-132
gnl|LJGI|TC66167 similar to UniRef100_A7PAX0 Cluster: Chromosome... 416 e-116
gnl|LJGI|BP057444 similar to UniRef100_A7PAX0 Cluster: Chromosom... 396 e-110
gnl|LJGI|TC58270 similar to UniRef100_A7PAX0 Cluster: Chromosome... 349 5e-96
>gnl|LJGI|AV765798 similar to UniRef100_A7PAX0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 552
Score = 470 bits (237), Expect = e-132
Identities = 237/237 (100%)
Strand = Plus / Plus
Query: 1 atgtcgaccgggcctggacttgagtctcttgtagatcagcaaatttcagtgattacaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 atgtcgaccgggcctggacttgagtctcttgtagatcagcaaatttcagtgattacaaat 238
Query: 61 gatggacgaaatatagtgggtaccctaaaaggttttgaccaggcaacgaatataattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gatggacgaaatatagtgggtaccctaaaaggttttgaccaggcaacgaatataattctt 298
Query: 121 gatgagtcccatgaacgagttttttctaccaaggaaggtgtacagctaattgctctcggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gatgagtcccatgaacgagttttttctaccaaggaaggtgtacagctaattgctctcggt 358
Query: 181 ctatacatcattaggggtgacaacataagtgttgtcggtgaactggatgaggatcta 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctatacatcattaggggtgacaacataagtgttgtcggtgaactggatgaggatcta 415
>gnl|LJGI|TC66167 similar to UniRef100_A7PAX0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (98%)
Length = 782
Score = 416 bits (210), Expect = e-116
Identities = 237/248 (95%), Gaps = 11/248 (4%)
Strand = Plus / Plus
Query: 1 atgtcgaccgggcctggacttgagtctcttgtagatc-----------agcaaatttcag 49
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 224 atgtcgaccgggcctggacttgagtctcttgtagatcgtaagcaatctagcaaatttcag 283
Query: 50 tgattacaaatgatggacgaaatatagtgggtaccctaaaaggttttgaccaggcaacga 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgattacaaatgatggacgaaatatagtgggtaccctaaaaggttttgaccaggcaacga 343
Query: 110 atataattcttgatgagtcccatgaacgagttttttctaccaaggaaggtgtacagctaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atataattcttgatgagtcccatgaacgagttttttctaccaaggaaggtgtacagctaa 403
Query: 170 ttgctctcggtctatacatcattaggggtgacaacataagtgttgtcggtgaactggatg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttgctctcggtctatacatcattaggggtgacaacataagtgttgtcggtgaactggatg 463
Query: 230 aggatcta 237
||||||||
Sbjct: 464 aggatcta 471
>gnl|LJGI|BP057444 similar to UniRef100_A7PAX0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (86%)
Length = 527
Score = 396 bits (200), Expect = e-110
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 38 agcaaatttcagtgattacaaatgatggacgaaatatagtgggtaccctaaaaggttttg 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agcaaatttcagtgattacaaatgatggacgaaatatagtgggtaccctaaaaggttttg 356
Query: 98 accaggcaacgaatataattcttgatgagtcccatgaacgagttttttctaccaaggaag 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 accaggcaacgaatataattcttgatgagtcccatgaacgagttttttctaccaaggaag 296
Query: 158 gtgtacagctaattgctctcggtctatacatcattaggggtgacaacataagtgttgtcg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtgtacagctaattgctctcggtctatacatcattaggggtgacaacataagtgttgtcg 236
Query: 218 gtgaactggatgaggatcta 237
||||||||||||||||||||
Sbjct: 235 gtgaactggatgaggatcta 216
>gnl|LJGI|TC58270 similar to UniRef100_A7PAX0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 919
Score = 349 bits (176), Expect = 5e-96
Identities = 215/228 (94%)
Strand = Plus / Plus
Query: 1 atgtcgaccgggcctggacttgagtctcttgtagatcagcaaatttcagtgattacaaat 60
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 208 atgtcgactgggcctggacttgagtctcttgtcgatcagcaaatttcagtaattacaaat 267
Query: 61 gatggacgaaatatagtgggtaccctaaaaggttttgaccaggcaacgaatataattctt 120
||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct: 268 gatggacgaaatatagtgggtgtcctaaaaggctttgaccaggcaactaatataattctt 327
Query: 121 gatgagtcccatgaacgagttttttctaccaaggaaggtgtacagctaattgctctcggt 180
|||||||||||||||||||||||||||||||||||||| || |||| ||| | |||||||
Sbjct: 328 gatgagtcccatgaacgagttttttctaccaaggaaggcgtccagcaaatagttctcggt 387
Query: 181 ctatacatcattaggggtgacaacataagtgttgtcggtgaactggat 228
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttatacatcattaggggtgacaacataagtgttgtcggtgaactggat 435