Miyakogusa Predicted Gene

Lj5g3v1533330.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1533330.1 tr|G7IAC4|G7IAC4_MEDTR Transcription factor PIF3
OS=Medicago truncatula GN=MTR_1g084980 PE=4
SV=1,71.66,0,HLH,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-binding domain,Helix-loop-helix domain; helix,CUFF.55491.1
         (2178 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73817                                                      365   e-100
gnl|LJGI|TC77685 similar to UniRef100_Q5ULY0 Cluster: Basic heli...    54   4e-06

>gnl|LJGI|TC73817 
          Length = 553

 Score =  365 bits (184), Expect = e-100
 Identities = 184/184 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1995 gccaaatgtcgactcacaagttaagcaaagcaccggcagccgtgacacaacaagtcagat 2054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gccaaatgtcgactcacaagttaagcaaagcaccggcagccgtgacacaacaagtcagat 60

                                                                        
Query: 2055 gcctccccagtgcgaaacagcaactgttggatttgaacagtcagctttggtgcacaatag 2114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gcctccccagtgcgaaacagcaactgttggatttgaacagtcagctttggtgcacaatag 120

                                                                        
Query: 2115 tggtcaggcctctttggctaatgacagtggcgctgttaatggcaaacaaggttatgattg 2174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  tggtcaggcctctttggctaatgacagtggcgctgttaatggcaaacaaggttatgattg 180

                
Query: 2175 acac 2178
            ||||
Sbjct: 181  acac 184


>gnl|LJGI|TC77685 similar to UniRef100_Q5ULY0 Cluster: Basic helix-loop-helix protein;
            n=1; Fragaria x ananassa|Rep: Basic helix-loop-helix
            protein - Fragaria ananassa (Strawberry), partial (45%)
          Length = 688

 Score = 54.0 bits (27), Expect = 4e-06
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1483 gataaagcttctatgctggatgaggcaattgagtatcttaaaacacttcagctccaagtt 1542
            ||||| ||||| ||||| ||||| || ||||| || ||||||   |||||||||||||| 
Sbjct: 545  gataaggcttccatgcttgatgaagctattgattaccttaaacagcttcagctccaagta 604

                           
Query: 1543 caaatgatgtcaatg 1557
            |||||| ||||||||
Sbjct: 605  caaatgctgtcaatg 619