Miyakogusa Predicted Gene

Lj5g3v1532240.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1532240.1 Non Chatacterized Hit- tr|F1QR37|F1QR37_DANRE
Uncharacterized protein (Fragment) OS=Danio rerio
GN=l,31.58,5,seg,NULL,CUFF.55431.1
         (277 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW597061 similar to UniRef100_A8RAM8 Cluster: Cytochrom...   549   e-156

>gnl|LJGI|BW597061 similar to UniRef100_A8RAM8 Cluster: Cytochrome oxidase subunit II;
           n=1; Spreo albicapillus|Rep: Cytochrome oxidase subunit
           II - Spreo albicapillus, partial (7%)
          Length = 484

 Score =  549 bits (277), Expect = e-156
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatgcctgtgatcatgggaaggtgtggcctagtgactatgacaaaggtaactggggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 atgatgcctgtgatcatgggaaggtgtggcctagtgactatgacaaaggtaactggggtg 222

                                                                       
Query: 61  ttgctgaccctgctattaacattaaagctgatgcattcatccgtaaatacaagcaacgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttgctgaccctgctattaacattaaagctgatgcattcatccgtaaatacaagcaacgcg 282

                                                                       
Query: 121 cttcagaatcctcttgctaccaagttgatccgcattctgaagatgcatgatgtgaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cttcagaatcctcttgctaccaagttgatccgcattctgaagatgcatgatgtgaaatta 342

                                                                       
Query: 181 atccatatgtatatttgtttgtcatttataggttattattggttctggtttgtactggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atccatatgtatatttgtttgtcatttataggttattattggttctggtttgtactggtg 402

                                                
Query: 241 gaaattatgttagttcttatatatatttataagtaac 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaaattatgttagttcttatatatatttataagtaac 439