Miyakogusa Predicted Gene

Lj5g3v1530040.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1530040.1 tr|Q65XP2|Q65XP2_ORYSJ Os05g0153400 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0072C16.19
PE=2,34.08,7e-19,PPR_2,Pentatricopeptide repeat; PPR,Pentatricopeptide
repeat; PPR: pentatricopeptide repeat domain,P,CUFF.55414.1
         (903 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC595045 weakly similar to UniRef100_A7NSQ1 Cluster: Ch...    54   2e-06

>gnl|LJGI|DC595045 weakly similar to UniRef100_A7NSQ1 Cluster: Chromosome chr18
           scaffold_1, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (14%)
          Length = 446

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 182 tgttcgatgaaatgacccacagagatgtcgtcgcctggaccgccatgatca 232
           ||||||| |||||| |||||||||||| || | |||||| |||||||||||
Sbjct: 396 tgttcgacgaaatgccccacagagatggcggcacctggaacgccatgatca 446