Miyakogusa Predicted Gene
- Lj5g3v1518810.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1518810.1 tr|G1K3G8|G1K3G8_XENTR RNA polymerase
II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=4
SV,40.69,6e-19,AAR054CP,NULL; TPR REPEAT CONTAINING PROTEIN,NULL;
Tetratricopeptide repeats,Tetratricopeptide repea,CUFF.55394.1
(867 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73949 similar to UniRef100_Q0DL11 Cluster: Os05g01299... 1671 0.0
gnl|LJGI|FS319324 similar to UniRef100_Q0DL11 Cluster: Os05g0129... 462 e-129
gnl|LJGI|TC68396 similar to UniRef100_Q6NN60 Cluster: RH61815p; ... 369 e-101
>gnl|LJGI|TC73949 similar to UniRef100_Q0DL11 Cluster: Os05g0129900 protein; n=1; Oryza
sativa Japonica Group|Rep: Os05g0129900 protein - Oryza
sativa subsp. japonica (Rice), partial (32%)
Length = 2293
Score = 1671 bits (843), Expect = 0.0
Identities = 861/867 (99%)
Strand = Plus / Plus
Query: 1 atggatttccagggattcttaactgacttgcaggattgggaagtttctacaaaggacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atggatttccagggattcttaactgacttgcaggattgggaagtttctacaaaggacaac 652
Query: 61 aaggcgcgcaaatccaagtcacaaaaggaaaatggctcatcttcaaaaggagatgctatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaggcgcgcaaatccaagtcacaaaaggaaaatggctcatcttcaaaaggagatgctatt 712
Query: 121 tcgtctgatcacacgaggatttcttcagggcagtatggtttcccgagaaataatgatgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tcgtctgatcacacgaggatttcttcagggcagtatggtttcccgagaaataatgatgcc 772
Query: 181 ctcactcgtctccagagtacttttgttccggaagatgttcctgatgcggcttctgagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctcactcgtctccagagtacttttgttccggaagatgttcctgatgcggcttctgagaaa 832
Query: 241 gatctgggtaatgagtttttcaaacagaagaagtttaaggaagctattgactgctactca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gatctgggtaatgagtttttcaaacagaagaagtttaaggaagctattgactgctactca 892
Query: 301 aggagcattgctttatctccaacagctgtagcatatgcaaatagggcaatggccttgatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 aggagcattgctttatctccaacagctgtagcatatgcaaatagggcaatggccttgatc 952
Query: 361 aagctcagaagattccaagaggctgaggatgactgtacagaggccttaaatctcgatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 aagctcagaagattccaagaggctgaggatgactgtacagaggccttaaatctcgatgac 1012
Query: 421 cgttacataaaagcatactcgcgtcgagcaacggctagaaaagaagttgggaagtttaaa 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1013 cgttacataaaagcatactcgcgccgagcaacggctagaaaagaagttgggaagtttaaa 1072
Query: 481 ggatccatggaggatgctgactttgccttgaggttggaacctaacaatcaagaaatcaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 ggatccatggaggatgctgactttgccttgaggttggaacctaacaatcaagaaatcaag 1132
Query: 541 aaacagtatgctgatgctaagtctttgtatgataatgaaaatcttcggaaagtatctgga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 aaacagtatgctgatgctaagtctttgtatgataatgaaaatcttcggaaagtatctgga 1192
Query: 601 gcactaagaagtactgtacagggaactcaaaaagtgggaaagtcagagacaaaagttaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 gcactaagaagtactgtacagggaactcaaaaagtgggaaagtcagagacaaaagttaat 1252
Query: 661 ggaagcagcatcccctccatttcacatgttactcaaaagtcagggccagctgaagttcat 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 ggaggcagcatcccctccatttcacatgttactcaaaagtcagggccagctgaagttcat 1312
Query: 721 caaacaaagggcaatgagaggcaatttcctgctaaagaatcactcttaatggagattgat 780
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 1313 caaacaaagggcaatgagaggcaagtccctgctaaagaatcactcttaatggagattgat 1372
Query: 781 aacggggacacaaaagccagaaacagcactcaaggacaagggaatggttctaaggaaggt 840
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 aacagggacacaagagccagaaacagcactcaaggacaagggaatggttctaaggaaggt 1432
Query: 841 tctacttcaagtaacagtttggagcag 867
|||||||||||||||||||||||||||
Sbjct: 1433 tctacttcaagtaacagtttggagcag 1459
>gnl|LJGI|FS319324 similar to UniRef100_Q0DL11 Cluster: Os05g0129900 protein; n=1;
Oryza sativa Japonica Group|Rep: Os05g0129900 protein -
Oryza sativa subsp. japonica (Rice), partial (17%)
Length = 712
Score = 462 bits (233), Expect = e-129
Identities = 236/237 (99%)
Strand = Plus / Plus
Query: 341 atagggcaatggccttgatcaagctcagaagattccaagaggctgaggatgactgtacag 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atagggcaatggccttgatcaagctcagaagattccaagaggctgaggatgactgtacag 60
Query: 401 aggccttaaatctcgatgaccgttacataaaagcatactcgcgtcgagcaacggctagaa 460
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61 aggccttaaatctcgatgaccgttacataaaagcatactcgcgccgagcaacggctagaa 120
Query: 461 aagaagttgggaagtttaaaggatccatggaggatgctgactttgccttgaggttggaac 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagaagttgggaagtttaaaggatccatggaggatgctgactttgccttgaggttggaac 180
Query: 521 ctaacaatcaagaaatcaagaaacagtatgctgatgctaagtctttgtatgataatg 577
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctaacaatcaagaaatcaagaaacagtatgctgatgctaagtctttgtatgataatg 237
>gnl|LJGI|TC68396 similar to UniRef100_Q6NN60 Cluster: RH61815p; n=1; Drosophila
melanogaster|Rep: RH61815p - Drosophila melanogaster
(Fruit fly), partial (3%)
Length = 795
Score = 369 bits (186), Expect = e-101
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 1 atggatttccagggattcttaactgacttgcaggattgggaagtttctacaaaggacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atggatttccagggattcttaactgacttgcaggattgggaagtttctacaaaggacaac 669
Query: 61 aaggcgcgcaaatccaagtcacaaaaggaaaatggctcatcttcaaaaggagatgctatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaggcgcgcaaatccaagtcacaaaaggaaaatggctcatcttcaaaaggagatgctatt 729
Query: 121 tcgtctgatcacacgaggatttcttcagggcagtatggtttcccgagaaataatgatgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tcgtctgatcacacgaggatttcttcagggcagtatggtttcccgagaaataatgatgcc 789
Query: 181 ctcact 186
||||||
Sbjct: 790 ctcact 795