Miyakogusa Predicted Gene
- Lj5g3v1514610.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1514610.1 tr|B9GR57|B9GR57_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_552315 PE=4
SV=1,24.38,0.000000000000001,no description,Tetratricopeptide-like
helical; PPR_2,Pentatricopeptide repeat;
PPR,Pentatricopeptide,CUFF.55377.1
(1456 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS326911 similar to UniRef100_A7PRT7 Cluster: Chromosom... 1156 0.0
gnl|LJGI|TC58694 homologue to UniRef100_Q9SHF0 Cluster: T19E23.1... 54 3e-06
>gnl|LJGI|FS326911 similar to UniRef100_A7PRT7 Cluster: Chromosome chr14 scaffold_27,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_27, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 616
Score = 1156 bits (583), Expect = 0.0
Identities = 583/583 (100%)
Strand = Plus / Plus
Query: 1 atgagcaaagggttgcagcagatagagcgcaggatcctgagtctccttcacggtgccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 atgagcaaagggttgcagcagatagagcgcaggatcctgagtctccttcacggtgccaaa 93
Query: 61 acccgcactcaactcacccaaatccacgcccatttcctccgccatggcctccaccactcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 acccgcactcaactcacccaaatccacgcccatttcctccgccatggcctccaccactcc 153
Query: 121 aaccaaatcctcgcccacttcatctccgtctgcgcctccctccaccgtgtcccttacgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aaccaaatcctcgcccacttcatctccgtctgcgcctccctccaccgtgtcccttacgcc 213
Query: 181 actcgcgtcttcaaccactcccccaaccccaacatcatcctctttaattccatcatcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 actcgcgtcttcaaccactcccccaaccccaacatcatcctctttaattccatcatcaaa 273
Query: 241 gcctgctccttatccccacccttccaacaatgcttccacctcttctccttaatgcgcaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gcctgctccttatccccacccttccaacaatgcttccacctcttctccttaatgcgcaat 333
Query: 301 gcccgcgccatttcccctgattacttcaccttcccctctctgctcaaagccgcttccaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gcccgcgccatttcccctgattacttcaccttcccctctctgctcaaagccgcttccaac 393
Query: 361 ctccgtgactttcagctgggccagtcgcttcacgcccaagtcaccacgcttgggttcgcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctccgtgactttcagctgggccagtcgcttcacgcccaagtcaccacgcttgggttcgcg 453
Query: 421 cgccatggtcctgttcgtgtgggggtagttgagctttatgcgaattgtgagagaatgggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgccatggtcctgttcgtgtgggggtagttgagctttatgcgaattgtgagagaatgggg 513
Query: 481 gacgcgggcaaggtgttcgatgaaatgcgtgagagagatgtaattgtttggaacctgatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gacgcgggcaaggtgttcgatgaaatgcgtgagagagatgtaattgtttggaacctgatg 573
Query: 541 attcaaggttattgtaaggtgggggagttggaaacgggtttgg 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 attcaaggttattgtaaggtgggggagttggaaacgggtttgg 616
>gnl|LJGI|TC58694 homologue to UniRef100_Q9SHF0 Cluster: T19E23.10; n=1; Arabidopsis
thaliana|Rep: T19E23.10 - Arabidopsis thaliana
(Mouse-ear cress), partial (5%)
Length = 777
Score = 54.0 bits (27), Expect = 3e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 489 caaggtgttcgatgaaatgcgtgagag 515
|||||||||||||||||||||||||||
Sbjct: 583 caaggtgttcgatgaaatgcgtgagag 609