Miyakogusa Predicted Gene

Lj5g3v1381580.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1381580.2 tr|Q9AT24|Q9AT24_PEA Histone H1 (Fragment)
OS=Pisum sativum GN=His1 PE=3 SV=1,64.94,4e-19,seg,NULL;
Linker_histone,Histone H1/H5; "Winged helix" DNA-binding domain,NULL;
HISTONEH5,Histone H5,CUFF.55202.2
         (594 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66437 similar to UniRef100_O65758 Cluster: Histone H1...   630   e-180
gnl|LJGI|BW632559 similar to UniRef100_Q9AT21 Cluster: Histone H...    56   3e-07
gnl|LJGI|DC594669 similar to UniRef100_Q9AT21 Cluster: Histone H...    56   3e-07
gnl|LJGI|TC69595 similar to UniRef100_Q84NF9 Cluster: Histone H1...    56   3e-07

>gnl|LJGI|TC66437 similar to UniRef100_O65758 Cluster: Histone H1; n=1; Cicer
           arietinum|Rep: Histone H1 - Cicer arietinum (Chickpea)
           (Garbanzo), partial (66%)
          Length = 870

 Score =  630 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaccaccgccaccaagaaggccgctccggcgaagaagccgctctcccaccctcccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  atgaccaccgccaccaagaaggccgctccggcgaagaagccgctctcccaccctcccttc 147

                                                                       
Query: 61  gccgagatgattaccgaagcgattgcgagtttgaaggagagaaccggttcaagccagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gccgagatgattaccgaagcgattgcgagtttgaaggagagaaccggttcaagccagcac 207

                                                                       
Query: 121 gcgattaccaagttcatcgaagggaagcacaaggagcttccaccgacgttccgcaaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gcgattaccaagttcatcgaagggaagcacaaggagcttccaccgacgttccgcaaactc 267

                                                                       
Query: 181 atcctgcatcagctcaagaagtcggttgccgccgggaagcttgttaaggtgaagaactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atcctgcatcagctcaagaagtcggttgccgccgggaagcttgttaaggtgaagaactcc 327

                                                                       
Query: 241 ttcaagctagcaccgtctcgacctgctccggcgaaagcagctcccgccgccgctgcacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcaagctagcaccgtctcgacctgctccggcgaaagcagctcccgccgccgctgcacct 387

                             
Query: 301 gcagccaagaagcccaaa 318
           ||||||||||||||||||
Sbjct: 388 gcagccaagaagcccaaa 405



 Score =  494 bits (249), Expect = e-139
 Identities = 252/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 342 caagccgaagccgaaggctaagacaacaactgccaaggctgttgcaaagccgaaggcaaa 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 caagccgaagccgaaggctaagacaacaactgccaaggctgttgcaaagccgaaggcaaa 482

                                                                       
Query: 402 agctgctgctgctgttgtgaagaaggcctctgccgtgaaacctaaggcggcggcggctaa 461
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 483 agctgctgctgctgttgtgaagaaggcctctgccgtgaaacctaaggcggtggcggctaa 542

                                                                       
Query: 462 gccgaaagcgaaggctgctgcggtggtgaaggctgtgaagaaggttgctgcgaagccggc 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gccgaaagcgaaggctgctgcggtggtgaaggctgtgaagaaggttgctgcgaagccggc 602

                                                                       
Query: 522 aaggaaggcgccggtgaaggcagtgaagaagcctaagagcgtgaaaacgccggtgaagaa 581
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaggaaggcgccggtgaaggcagtgaagaagcctaagagcgtgaaaacgccggtgaagaa 662

                        
Query: 582 agcgaagaagtag 594
           |||||||||||||
Sbjct: 663 agcgaagaagtag 675


>gnl|LJGI|BW632559 similar to UniRef100_Q9AT21 Cluster: Histone H1; n=1; Lathyrus
           sativus|Rep: Histone H1 - Lathyrus sativus (Chickling
           vetch), partial (28%)
          Length = 517

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 205 gttgccgccgggaagcttgttaaggtgaagaactccttcaagct 248
           ||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct: 454 gttgctgctgggaagcttgtgaaggtgaaaaactccttcaagct 497


>gnl|LJGI|DC594669 similar to UniRef100_Q9AT21 Cluster: Histone H1; n=1; Lathyrus
           sativus|Rep: Histone H1 - Lathyrus sativus (Chickling
           vetch), partial (28%)
          Length = 478

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 205 gttgccgccgggaagcttgttaaggtgaagaactccttcaagct 248
           ||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct: 384 gttgctgctgggaagcttgtgaaggtgaaaaactccttcaagct 427


>gnl|LJGI|TC69595 similar to UniRef100_Q84NF9 Cluster: Histone H1; n=1; Vicia
           hirsuta|Rep: Histone H1 - Vicia hirsuta, partial (70%)
          Length = 1298

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 205 gttgccgccgggaagcttgttaaggtgaagaactccttcaagct 248
           ||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct: 416 gttgctgctgggaagcttgtgaaggtgaaaaactccttcaagct 459