Miyakogusa Predicted Gene
- Lj5g3v1360520.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1360520.1 Non Chatacterized Hit- tr|D7KQA7|D7KQA7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,62.5,9e-19,SSXT,SSXT; coiled-coil,NULL; SYNOVIAL SARCOMA
ASSOCIATED SS18 PROTEIN,SSXT;
seg,NULL,NODE_47957_length_1049_cov_14.057198.path2.1
(612 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS325485 similar to UniRef100_A7QVN6 Cluster: Chromosom... 995 0.0
gnl|LJGI|TC66497 similar to UniRef100_A7QVR7 Cluster: Chromosome... 297 4e-80
gnl|LJGI|GO025971 similar to UniRef100_A7QVN6 Cluster: Chromosom... 260 9e-69
>gnl|LJGI|FS325485 similar to UniRef100_A7QVN6 Cluster: Chromosome chr14 scaffold_190,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_190, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (61%)
Length = 824
Score = 995 bits (502), Expect = 0.0
Identities = 502/502 (100%)
Strand = Plus / Plus
Query: 1 atgcagcagcacctgatgcagatgcagcccatgatggcatcctactacaccaacaacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgcagcagcacctgatgcagatgcagcccatgatggcatcctactacaccaacaacaac 382
Query: 61 gtcacctctgatcacattcaacagtacctggatgagaacaagtccttaattctgaagatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtcacctctgatcacattcaacagtacctggatgagaacaagtccttaattctgaagatt 442
Query: 121 gttgaaagccagaactctgggaagctgagcgagtgtgctgagaatcaatcaaggctccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gttgaaagccagaactctgggaagctgagcgagtgtgctgagaatcaatcaaggctccag 502
Query: 181 agaaatctcatgtacctggctgcaatagctgattctcaaccccaaccacccaccatgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agaaatctcatgtacctggctgcaatagctgattctcaaccccaaccacccaccatgcct 562
Query: 241 ggtcagtatcctccaagtggaattgtgcagcagcaaggtgcacactacatgcagcaggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggtcagtatcctccaagtggaattgtgcagcagcaaggtgcacactacatgcagcaggct 622
Query: 301 caacaacaggctcagcagatgacacaacagcaacaactcatggcggcacgctcttccctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caacaacaggctcagcagatgacacaacagcaacaactcatggcggcacgctcttccctt 682
Query: 361 ttgtacactcagcagcagccttactccacacttcaacagcagcaagccttgcagcacagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgtacactcagcagcagccttactccacacttcaacagcagcaagccttgcagcacagc 742
Query: 421 cagctcggtatgagttccggtggaagttccggccttcacatgttccaaagtgaagctacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cagctcggtatgagttccggtggaagttccggccttcacatgttccaaagtgaagctacc 802
Query: 481 agtgttggaggcaatgccgggt 502
||||||||||||||||||||||
Sbjct: 803 agtgttggaggcaatgccgggt 824
>gnl|LJGI|TC66497 similar to UniRef100_A7QVR7 Cluster: Chromosome chr7 scaffold_192,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr7 scaffold_192, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (61%)
Length = 1288
Score = 297 bits (150), Expect = 4e-80
Identities = 224/248 (90%), Gaps = 3/248 (1%)
Strand = Plus / Plus
Query: 1 atgcagcagcacctgatgcagatgcagcccatgatggcatcctactacaccaacaacaac 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 233 atgcagcagcacctgatgcagatgcagcccatgatggctgcctactaccccaac---aac 289
Query: 61 gtcacctctgatcacattcaacagtacctggatgagaacaagtccttaattctgaagatt 120
|||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct: 290 gtcaccactgatcacattcagcagtatctggatgagaacaaatccttaattctgaagatt 349
Query: 121 gttgaaagccagaactctgggaagctgagcgagtgtgctgagaatcaatcaaggctccag 180
|| ||||||||||| ||||| ||||||| ||||||||| ||| | ||| ||||||| |||
Sbjct: 350 gtcgaaagccagaattctggtaagctgaccgagtgtgccgagtaccaagcaaggctacag 409
Query: 181 agaaatctcatgtacctggctgcaatagctgattctcaaccccaaccacccaccatgcct 240
||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||
Sbjct: 410 agaaatctcatgtaccttgctgcaatagctgactctcaaccccaaccacctaacatgcct 469
Query: 241 ggtcagta 248
|| |||||
Sbjct: 470 ggccagta 477
>gnl|LJGI|GO025971 similar to UniRef100_A7QVN6 Cluster: Chromosome chr14 scaffold_190,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_190, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (63%)
Length = 688
Score = 260 bits (131), Expect = 9e-69
Identities = 179/195 (91%)
Strand = Plus / Plus
Query: 54 caacaacgtcacctctgatcacattcaacagtacctggatgagaacaagtccttaattct 113
||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 143 caacaacgtcaccactgatcacattcagcagtatctggatgagaacaaatccttaattct 202
Query: 114 gaagattgttgaaagccagaactctgggaagctgagcgagtgtgctgagaatcaatcaag 173
||||||||| ||||||||||| ||||| ||||||| ||||||||| ||||| ||| ||||
Sbjct: 203 gaagattgtcgaaagccagaattctggcaagctgaccgagtgtgccgagaaccaagcaag 262
Query: 174 gctccagagaaatctcatgtacctggctgcaatagctgattctcaaccccaaccacccac 233
||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 263 gctacagagaaatctcatgtaccttgctgcaatagctgactctcaaccccaaccacccaa 322
Query: 234 catgcctggtcagta 248
||||||||| |||||
Sbjct: 323 catgcctggccagta 337