Miyakogusa Predicted Gene

Lj5g3v1315660.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1315660.1 Non Chatacterized Hit- tr|K4AJZ1|K4AJZ1_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,65.67,1e-16,ARE1-LIKE PROTEIN,NULL; SUPPRESSOR OF ACTIN MUTATIONS
2/VACUOLAR PROTEIN SORTING 52,Vps52/Sac2,FS355688.path1.1
         (205 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS355688 homologue to UniRef100_A7P2R4 Cluster: Chromos...   398   e-111

>gnl|LJGI|FS355688 homologue to UniRef100_A7P2R4 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (9%)
          Length = 455

 Score =  398 bits (201), Expect = e-111
 Identities = 204/205 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcataaagatgtcatcacgtctttcagcaactttttgtgtggcatggaaatattaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atgcataaagatgtcatcacgtctttcagcaactttttgtgtggcatggaaatattaaga 395

                                                                       
Query: 61  gctgcattgacccagttgttactttattatacaagactctcggattgcatcaagaggatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gctgcattgacccagttgttactttattatacaagactctcggattgcatcaagaggatc 335

                                                                       
Query: 121 gttggcgggtctgcattgaacaaggatcttgtttccatatcttctatcatgtatgagatt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gttggcgggtttgcattgaacaaggatcttgtttccatatcttctatcatgtatgagatt 275

                                    
Query: 181 aggaaatactcaaggactttctgat 205
           |||||||||||||||||||||||||
Sbjct: 274 aggaaatactcaaggactttctgat 250