Miyakogusa Predicted Gene
- Lj5g3v1301180.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1301180.1 Non Chatacterized Hit- tr|H3GQY3|H3GQY3_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,27.66,0.00006,no description,NULL; R3H domain,NULL; Putative
single-stranded nucleic acids-bindi,Single-stranded n,CUFF.55118.1
(969 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75585 similar to UniRef100_A7PVA8 Cluster: Chromosome... 848 0.0
gnl|LJGI|AV417686 similar to UniRef100_A7PVA8 Cluster: Chromosom... 821 0.0
>gnl|LJGI|TC75585 similar to UniRef100_A7PVA8 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (38%)
Length = 619
Score = 848 bits (428), Expect = 0.0
Identities = 431/432 (99%)
Strand = Plus / Plus
Query: 1 atgagtatgacccaattcgccatggttgaggagttggcttttcttgtgaaggacaatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atgagtatgacccaattcgccatggttgaggagttggcttttcttgtgaaggacaatctt 167
Query: 61 ccttgcaagcatctagttctcacaatggaggaagtcttagttaactttctcgaggctgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ccttgcaagcatctagttctcacaatggaggaagtcttagttaactttctcgaggctgat 227
Query: 121 gacacaagttcagatgggatcttggaattggagccaatgaactcttacaaccgtcttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gacacaagttcagatgggatcttggaattggagccaatgaactcttacaaccgtcttctc 287
Query: 181 ttacatcgccttgctgagatatttgggtttgcgcatgaatctgttggtgaaggagatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttacatcgccttgctgagatatttgggtttgcgcatgaatctgttggtgaaggagatgat 347
Query: 241 cggcatttgattcttgagagatgtccagatacatctatgccttctatccttgtcagtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cggcatttgattcttgagagatgtccagatacatctatgccttctatccttgtcagtgat 407
Query: 301 attctatggaaatatgatgaacctcaatctttgatggagtcacacgactcgcatcaaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 attctatggaaatatgatgaacctcaatctttgatggagtcacacgactcgcatcaaata 467
Query: 361 ttaaggagaaaagaagcctctccagtttcacagacaaacgcagcatccattcaacagtcg 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttaaggagaaaagaagcccctccagtttcacagacaaacgcagcatccattcaacagtcg 527
Query: 421 ctggaggaaaga 432
||||||||||||
Sbjct: 528 ctggaggaaaga 539
Score = 172 bits (87), Expect = 3e-42
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 488 ggaaagagcctggtgagcaaaagccacgaactgtgcctgtggttgcccgccgtatgattg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggaaagagcctggtgagcaaaagccacgaactgtgcctgtggttgcccgccgtatgattg 592
Query: 548 cgcatgcattaggtcaaaggatccata 574
|||||||||||||||||||||||||||
Sbjct: 593 cgcatgcattaggtcaaaggatccata 619
>gnl|LJGI|AV417686 similar to UniRef100_A7PVA8 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 414
Score = 821 bits (414), Expect = 0.0
Identities = 414/414 (100%)
Strand = Plus / Plus
Query: 343 cacgactcgcatcaaatattaaggagaaaagaagcctctccagtttcacagacaaacgca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacgactcgcatcaaatattaaggagaaaagaagcctctccagtttcacagacaaacgca 60
Query: 403 gcatccattcaacagtcgctggaggaaagaaaagcagcttattttgctgctcgtgagcgg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcatccattcaacagtcgctggaggaaagaaaagcagcttattttgctgctcgtgagcgg 120
Query: 463 attttttctctgagtttggaagaggggaaagagcctggtgagcaaaagccacgaactgtg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attttttctctgagtttggaagaggggaaagagcctggtgagcaaaagccacgaactgtg 180
Query: 523 cctgtggttgcccgccgtatgattgcgcatgcattaggtcaaaggatccatacgaggaat 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctgtggttgcccgccgtatgattgcgcatgcattaggtcaaaggatccatacgaggaat 240
Query: 583 cagaatgacttggttagtgatagtatgaaggataaagtgctcacagatgaattaaatggt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagaatgacttggttagtgatagtatgaaggataaagtgctcacagatgaattaaatggt 300
Query: 643 caagataagactagtgagaagtctaatctcatgaaggattctgaagagtccttacacctg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caagataagactagtgagaagtctaatctcatgaaggattctgaagagtccttacacctg 360
Query: 703 agaagaaactcaaatagcaaaataagaaacacaggcagttctaatgctggctcg 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agaagaaactcaaatagcaaaataagaaacacaggcagttctaatgctggctcg 414