Miyakogusa Predicted Gene

Lj5g3v1260880.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1260880.1 tr|I1NIH9|I1NIH9_SOYBN Ubiquitin
carboxyl-terminal hydrolase OS=Glycine max GN=Gma.30282 PE=3
SV=1,83.84,0,seg,NULL; Cysteine proteinases,NULL; UCH_2_1,Peptidase
C19, ubiquitin carboxyl-terminal hydrolase 2,,CUFF.55097.1
         (1635 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV776416 weakly similar to UniRef100_A7QJ40 Cluster: Ub...   549   e-155
gnl|LJGI|BP033715 similar to UniRef100_A7QJ41 Cluster: Chromosom...    82   1e-14

>gnl|LJGI|AV776416 weakly similar to UniRef100_A7QJ40 Cluster: Ubiquitin
            carboxyl-terminal hydrolase; n=1; Vitis vinifera|Rep:
            Ubiquitin carboxyl-terminal hydrolase - Vitis vinifera
            (Grape), partial (7%)
          Length = 429

 Score =  549 bits (277), Expect = e-155
 Identities = 308/317 (97%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1320 ttatcgatatctagataatgcgttggagtcattgacttcaa-taaaggatgatgaacata 1378
            |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| 
Sbjct: 1    ttatcgatatctagataaggcgtcggagtcattgacttcaagtaaaggatgatgaacatg 60

                                                                        
Query: 1379 ttgtggcctatcgactcaaaagtggagcccggaaaacaaaaattgaagtaatgcatcgat 1438
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   atgtggcctatcgactcaaaagtggagcccggaaaacaaaaattgaagtaatgcatcgat 120

                                                                        
Query: 1439 ggatggataaaatgaaaggtggagagaggaagctctttgggacccccttggttacttatt 1498
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 121  ggatggataaaatgaaaggtggagagaggaagctcttcgggacccccttggttacttatt 180

                                                                        
Query: 1499 tggtagaaaaccctcaatatggagccgacattgaggaatctgtacataaactgttggcac 1558
             ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 181  aggtagaaaaccctcaatatggagccgagattgaggaatctgtacatagactgttggcac 240

                                                                        
Query: 1559 ctttaagaaaagcatactcttcaactaagtctcatgatgatgatgaaaaggaaaatggtt 1618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ctttaagaaaagcatactcttcaactaagtctcatgatgatgatgaaaaggaaaatggtt 300

                             
Query: 1619 tcatctcagctggcagt 1635
            |||||||||||||||||
Sbjct: 301  tcatctcagctggcagt 317


>gnl|LJGI|BP033715 similar to UniRef100_A7QJ41 Cluster: Chromosome chr2 scaffold_105,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_105, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (6%)
          Length = 538

 Score = 81.8 bits (41), Expect = 1e-14
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 23  tgtgggaaaggctgttggaatggtacaaaggtggaccagca 63
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgtgggaaaggctgttggaatggtacaaaggtggaccagca 538