Miyakogusa Predicted Gene
- Lj5g3v1225680.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1225680.1 tr|Q1SMZ4|Q1SMZ4_MEDTR Tetratricopeptide-like
helical OS=Medicago truncatula
GN=MtrDRAFT_AC139526g33,26.57,5e-19,PPR_2,Pentatricopeptide repeat;
PPR_1,Pentatricopeptide repeat; PPR,Pentatricopeptide repeat; no
des,CUFF.55067.1
(732 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Te... 396 e-110
gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Ch... 270 1e-71
gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chr... 186 1e-46
gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Te... 137 1e-31
gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Ch... 68 8e-11
gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Ch... 60 2e-08
>gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (9%)
Length = 527
Score = 396 bits (200), Expect = e-110
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 533 aggatctttttaaaaaaggctataatttgaataactggacatataatactatgatcaatg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aggatctttttaaaaaaggctataatttgaataactggacatataatactatgatcaatg 468
Query: 593 gactttgtaaagagggcttgtttgatgaagcattgacattgatgtcgaaaatggaagaca 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gactttgtaaagagggcttgtttgatgaagcattgacattgatgtcgaaaatggaagaca 408
Query: 653 atggttgcatccatgatccaataacttttgaaacaattatttctgctctttttgaaaaag 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atggttgcatccatgatccaataacttttgaaacaattatttctgctctttttgaaaaag 348
Query: 713 gtgaaaatgataaggcagag 732
||||||||||||||||||||
Sbjct: 347 gtgaaaatgataaggcagag 328
>gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Chromosome undetermined
scaffold_1129, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1129,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (13%)
Length = 688
Score = 270 bits (136), Expect = 1e-71
Identities = 385/468 (82%)
Strand = Plus / Minus
Query: 265 tctcttattgatggtttatgcaaaacagggaaagtctctaatgcatgggagcttcttgat 324
|||||||| |||||||| |||||| |||||| | | ||| |||| ||||| ||| |||||
Sbjct: 658 tctcttatagatggtttgtgcaaatcagggagaatatctgatgcttgggatcttgttgat 599
Query: 325 gagatgcatgttagaggtcaaccagccgacataatcacctataattctttcttggatgct 384
||||||||| ||||||||||||| | || ||||||| || |||||||| |||||||||
Sbjct: 598 gagatgcattgtagaggtcaaccacctgatgtaatcacatacaattctttattggatgct 539
Query: 385 ttatgcaaaggtcatcatgttgataagggaattgctttaatcaagaaagttatagacaag 444
||||||||| | ||||||||||| | || |||| |||| ||||||||| | | |||| ||
Sbjct: 538 ttatgcaaaagccatcatgttgacagggcaatttctttgatcaagaaaatgaaagaccag 479
Query: 445 ggtattcagccagatatgtgcacatacaatatacttctggatggactatgcaaatgtggt 504
||| |||| || ||| |||||||||||||||| ||||||||||||||||| ||
Sbjct: 478 ggtcttcaaccttcgatgcacacatacaatatacttatggatggactatgcaaagcaggc 419
Query: 505 agaattaaggatgcacaagaggtttttcaggatctttttaaaaaaggctataatttgaat 564
||| || || |||||||||||||||||||||||||||| | |||||||| ||||| ||
Sbjct: 418 agagttgagaatgcacaagaggtttttcaggatcttttaattaaaggctacaatttagat 359
Query: 565 aactggacatataatactatgatcaatggactttgtaaagagggcttgtttgatgaagca 624
|| | |||| | |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 358 gtacggtcgtatacaattatgattaatgggctttgtaaagagggcttgtttgatgaagca 299
Query: 625 ttgacattgatgtcgaaaatggaagacaatggttgcatccatgatccaataacttttgaa 684
|||||| ||||||| ||||||||| |||| |||||||||| | | | |||||| ||||
Sbjct: 298 ttgacactgatgtcaaaaatggaaaacaacggttgcatccctaacgctgtaacttatgaa 239
Query: 685 acaattatttctgctctttttgaaaaaggtgaaaatgataaggcagag 732
| ||| ||| |||||| ||| |||||||||| |||| ||||| ||||
Sbjct: 238 ataataattcgtgctctctttcaaaaaggtgacaatgttaaggtagag 191
>gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 1411
Score = 186 bits (94), Expect = 1e-46
Identities = 238/286 (83%)
Strand = Plus / Plus
Query: 447 tattcagccagatatgtgcacatacaatatacttctggatggactatgcaaatgtggtag 506
|||||||| |||| || ||||||||| ||||||| |||||||||| |||||| || ||
Sbjct: 1 tattcagctagatgtgcgcacatacagtatacttatggatggactgtgcaaagaaggaag 60
Query: 507 aattaaggatgcacaagaggtttttcaggatctttttaaaaaaggctataatttgaataa 566
| ||||| |||||||||| ||||||||||||||||| | ||||||||| || | | |
Sbjct: 61 acttaagaatgcacaagatgtttttcaggatcttttaactaaaggctatcatgtaactgt 120
Query: 567 ctggacatataatactatgatcaatggactttgtaaagagggcttgtttgatgaagcatt 626
| || ||||| || |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 121 cccgatatatactattatgatcaatgggctttgtaaagagggtttgtttgatgaagcatt 180
Query: 627 gacattgatgtcgaaaatggaagacaatggttgcatccatgatccaataacttttgaaac 686
| | ||| |||| ||||||||||||||||||||||| | | || | |||||||| |||||
Sbjct: 181 ggccttgctgtctaaaatggaagacaatggttgcatgcctaatgctataactttcgaaac 240
Query: 687 aattatttctgctctttttgaaaaaggtgaaaatgataaggcagag 732
||| ||| |||||| ||||| || ||||| ||| ||| |||||||
Sbjct: 241 aatcattcgtgctctatttgagaagggtgagaattatatggcagag 286
>gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (12%)
Length = 528
Score = 137 bits (69), Expect = 1e-31
Identities = 210/257 (81%)
Strand = Plus / Minus
Query: 368 attctttcttggatgctttatgcaaaggtcatcatgttgataagggaattgctttaatca 427
||||||| || |||||| ||||||| |||||||||||| |||| || || ||| |
Sbjct: 514 attctttattagatgctctatgcaagaatcatcatgttgacaaggccatcgcattacttg 455
Query: 428 agaaagttatagacaagggtattcagccagatatgtgcacatacaatatacttctggatg 487
||| ||||| ||||||||| ||||| |||||||||| ||||||||||||| || | ||||
Sbjct: 454 agagagttaaagacaagggcattcaaccagatatgtacacatacaatataattattgatg 395
Query: 488 gactatgcaaatgtggtagaattaaggatgcacaagaggtttttcaggatctttttaaaa 547
||||||||||| |||| ||| | ||||||||||||||| |||||||||||||||| | |
Sbjct: 394 gactatgcaaaagtggaagagtaaaggatgcacaagagctttttcaggatcttttgatta 335
Query: 548 aaggctataatttgaataactggacatataatactatgatcaatggactttgtaaagagg 607
|||||||| | ||| ||||||||||| ||||||||||| ||||||| |||||
Sbjct: 334 aaggctatcggctaaatgttgtgacatataatataatgatcaatgggctttgtatagagg 275
Query: 608 gcttgtttgatgaagca 624
| |||| |||||||||
Sbjct: 274 gtttgtccgatgaagca 258
>gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Chromosome chr1
scaffold_5, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 576
Score = 67.9 bits (34), Expect = 8e-11
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 635 tgtcgaaaatggaagacaatggttgcatccatgatccaataacttttgaaacaattattt 694
|||| ||||||||||||||||||||||| | | || | | | |||| ||||||| ||||
Sbjct: 162 tgtcaaaaatggaagacaatggttgcattcctaatgctgtgaattttcaaacaataattt 103
Query: 695 ctgctctttttgaaaaaggtgaaaatgataaggcagag 732
|||||| ||||||||| ||| |||||||||||||||
Sbjct: 102 gtgctctctttgaaaaaaatgagaatgataaggcagag 65
>gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 537
Score = 60.0 bits (30), Expect = 2e-08
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 2 tgttagctgtgatgatgaagcagggtgtgaaacctaatgttgttacttataattctttga 61
||||||||||||||||||| | ||||| || ||| || || | ||||| |||||| | |
Sbjct: 452 tgttagctgtgatgatgaaagaaggtgtaaagcctgatattttcacttacaattctatca 511
Query: 62 tggatgggtattgcttagttaa 83
|||||||||||||| |||||||
Sbjct: 512 tggatgggtattgcctagttaa 533