Miyakogusa Predicted Gene
- Lj5g3v1211580.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1211580.1 Non Chatacterized Hit- tr|K4C772|K4C772_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,73.01,0,ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX,Clp
protease, ATP-binding subunit ClpX; HSL AND ,CUFF.55059.1
(834 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75694 similar to UniRef100_A7Q7Q4 Cluster: Chromosome... 535 e-151
gnl|LJGI|TC82758 similar to UniRef100_Q9LTA9 Cluster: CLP protea... 125 5e-28
gnl|LJGI|TC59225 similar to UniRef100_A7QF37 Cluster: Chromosome... 66 4e-10
gnl|LJGI|TC67655 similar to UniRef100_A7QF37 Cluster: Chromosome... 54 1e-06
>gnl|LJGI|TC75694 similar to UniRef100_A7Q7Q4 Cluster: Chromosome chr18 scaffold_61,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_61, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 678
Score = 535 bits (270), Expect = e-151
Identities = 273/274 (99%)
Strand = Plus / Plus
Query: 266 ctgtgcatactcctccgggcccaccttttccacctggtcttaaccttgttcgggctgaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctgtgcatactcctccgggcccaccttttccacctggtcttaaccttgttcgggctgaga 464
Query: 326 agactgctagttcaagcaattcttcatggggtggttccaatttgggtagggatttgccta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agactgctagttcaagcaattcttcatggggtggttccaatttgggtagggatttgccta 524
Query: 386 ctccaaaggaaatttgcaagggtcttgacaagtttgttattggtcaaaattcagctaaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctccaaaggaaatttgcaagggtcttgacaagtttgttattggtcaaaattcagctaaga 584
Query: 446 aggtgctttctgtggctgtttataaccactataaaagaatatactatgcctcttcacagg 505
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 585 aggtgctttctgtggctgtttataaccactataaaagaatataccatgcctcttcacagg 644
Query: 506 aagggtcaggggaagattcaaaaatttctgaagg 539
||||||||||||||||||||||||||||||||||
Sbjct: 645 aagggtcaggggaagattcaaaaatttctgaagg 678
Score = 464 bits (234), Expect = e-130
Identities = 234/234 (100%)
Strand = Plus / Plus
Query: 1 atgtctcgaatcatcgccgcatggaagaagcagaagcctcttctccaccatctacccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atgtctcgaatcatcgccgcatggaagaagcagaagcctcttctccaccatctacccact 199
Query: 61 ctctctccctctccgtcttcttcacgcgccacccaccacttcactctttcttcacgccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctctctccctctccgtcttcttcacgcgccacccaccacttcactctttcttcacgccac 259
Query: 121 cgccacaacaacaacaatttccacttcgccaccacccagcaccgctgcaagagctatagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cgccacaacaacaacaatttccacttcgccaccacccagcaccgctgcaagagctatagc 319
Query: 181 actgcacctctcttccgaggtagcttgttgggtgtcggtggaacccctccagac 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actgcacctctcttccgaggtagcttgttgggtgtcggtggaacccctccagac 373
>gnl|LJGI|TC82758 similar to UniRef100_Q9LTA9 Cluster: CLP protease regulatory
subunit CLPX-like; n=1; Arabidopsis thaliana|Rep: CLP
protease regulatory subunit CLPX-like - Arabidopsis
thaliana (Mouse-ear cress), partial (35%)
Length = 1064
Score = 125 bits (63), Expect = 5e-28
Identities = 174/211 (82%)
Strand = Plus / Plus
Query: 604 tcagggaagacattacttgcaaaaacgctagctcgatttgtcaatgtcccgtttgtcatt 663
||||||||||| || || || |||||||| || || |||||||||| || |||| ||||
Sbjct: 779 tcagggaagaccttgctcgccaaaacgcttgcccggattgtcaatgttccatttgccatt 838
Query: 664 gctgatgcaacaaccttaacacaggctggttatgttggagaagatgttgaatcaatattg 723
|||||||| || || || || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 839 gctgatgctaccactttcacgcaggctggttatgttggagaagatgttgagtcaatatta 898
Query: 724 tataaactactcgtggcagcagagttcaatgttcaagcagctcaacaagggattgtttac 783
||||| || || |||| ||| || ||| | || || |||||| | ||||||||| |||
Sbjct: 899 tataagcttcttgtggaagctgatttcgacgtggaattagctcagcgagggattgtctac 958
Query: 784 attgatgaagtggacaagataactaagaagg 814
|||||||||| || ||||| ||||||||||
Sbjct: 959 gttgatgaagttgataagattactaagaagg 989
>gnl|LJGI|TC59225 similar to UniRef100_A7QF37 Cluster: Chromosome chr16 scaffold_86,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_86, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (36%)
Length = 821
Score = 65.9 bits (33), Expect = 4e-10
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 589 atgggtccaacaggttcagggaagacattacttgcaaaaacgctagctcgatttgtcaat 648
||||| |||||||| ||||||||||| |||||||| ||||| | ||||| ||||| |||
Sbjct: 745 atggggccaacaggatcagggaagacgttacttgccaaaaccttggctcggtttgtaaat 804
Query: 649 gtcccgtttgtcattgc 665
||||| ||||| |||||
Sbjct: 805 gtcccctttgttattgc 821
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 442 aagaaggtgctttctgtggctgtttataaccacta 476
|||||||||||||||||||| |||||||| |||||
Sbjct: 580 aagaaggtgctttctgtggcagtttataatcacta 614
>gnl|LJGI|TC67655 similar to UniRef100_A7QF37 Cluster: Chromosome chr16 scaffold_86,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_86, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 930
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 442 aagaaggtgctttctgtggctgtttataaccacta 476
|||||||||||||||||||| |||||||| |||||
Sbjct: 814 aagaaggtgctttctgtggcagtttataatcacta 848