Miyakogusa Predicted Gene

Lj5g3v1211580.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1211580.1 Non Chatacterized Hit- tr|K4C772|K4C772_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,73.01,0,ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX,Clp
protease, ATP-binding subunit ClpX; HSL AND ,CUFF.55059.1
         (834 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75694 similar to UniRef100_A7Q7Q4 Cluster: Chromosome...   535   e-151
gnl|LJGI|TC82758 similar to UniRef100_Q9LTA9 Cluster: CLP protea...   125   5e-28
gnl|LJGI|TC59225 similar to UniRef100_A7QF37 Cluster: Chromosome...    66   4e-10
gnl|LJGI|TC67655 similar to UniRef100_A7QF37 Cluster: Chromosome...    54   1e-06

>gnl|LJGI|TC75694 similar to UniRef100_A7Q7Q4 Cluster: Chromosome chr18 scaffold_61,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_61, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (9%)
          Length = 678

 Score =  535 bits (270), Expect = e-151
 Identities = 273/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 266 ctgtgcatactcctccgggcccaccttttccacctggtcttaaccttgttcgggctgaga 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctgtgcatactcctccgggcccaccttttccacctggtcttaaccttgttcgggctgaga 464

                                                                       
Query: 326 agactgctagttcaagcaattcttcatggggtggttccaatttgggtagggatttgccta 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agactgctagttcaagcaattcttcatggggtggttccaatttgggtagggatttgccta 524

                                                                       
Query: 386 ctccaaaggaaatttgcaagggtcttgacaagtttgttattggtcaaaattcagctaaga 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctccaaaggaaatttgcaagggtcttgacaagtttgttattggtcaaaattcagctaaga 584

                                                                       
Query: 446 aggtgctttctgtggctgtttataaccactataaaagaatatactatgcctcttcacagg 505
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 585 aggtgctttctgtggctgtttataaccactataaaagaatataccatgcctcttcacagg 644

                                             
Query: 506 aagggtcaggggaagattcaaaaatttctgaagg 539
           ||||||||||||||||||||||||||||||||||
Sbjct: 645 aagggtcaggggaagattcaaaaatttctgaagg 678



 Score =  464 bits (234), Expect = e-130
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctcgaatcatcgccgcatggaagaagcagaagcctcttctccaccatctacccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atgtctcgaatcatcgccgcatggaagaagcagaagcctcttctccaccatctacccact 199

                                                                       
Query: 61  ctctctccctctccgtcttcttcacgcgccacccaccacttcactctttcttcacgccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctctctccctctccgtcttcttcacgcgccacccaccacttcactctttcttcacgccac 259

                                                                       
Query: 121 cgccacaacaacaacaatttccacttcgccaccacccagcaccgctgcaagagctatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cgccacaacaacaacaatttccacttcgccaccacccagcaccgctgcaagagctatagc 319

                                                                 
Query: 181 actgcacctctcttccgaggtagcttgttgggtgtcggtggaacccctccagac 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actgcacctctcttccgaggtagcttgttgggtgtcggtggaacccctccagac 373


>gnl|LJGI|TC82758 similar to UniRef100_Q9LTA9 Cluster: CLP protease regulatory
           subunit CLPX-like; n=1; Arabidopsis thaliana|Rep: CLP
           protease regulatory subunit CLPX-like - Arabidopsis
           thaliana (Mouse-ear cress), partial (35%)
          Length = 1064

 Score =  125 bits (63), Expect = 5e-28
 Identities = 174/211 (82%)
 Strand = Plus / Plus

                                                                       
Query: 604 tcagggaagacattacttgcaaaaacgctagctcgatttgtcaatgtcccgtttgtcatt 663
           ||||||||||| || || || |||||||| || ||  |||||||||| || |||| ||||
Sbjct: 779 tcagggaagaccttgctcgccaaaacgcttgcccggattgtcaatgttccatttgccatt 838

                                                                       
Query: 664 gctgatgcaacaaccttaacacaggctggttatgttggagaagatgttgaatcaatattg 723
           |||||||| || || || || ||||||||||||||||||||||||||||| |||||||| 
Sbjct: 839 gctgatgctaccactttcacgcaggctggttatgttggagaagatgttgagtcaatatta 898

                                                                       
Query: 724 tataaactactcgtggcagcagagttcaatgttcaagcagctcaacaagggattgtttac 783
           ||||| || || |||| ||| || ||| | ||  ||  |||||| | ||||||||| |||
Sbjct: 899 tataagcttcttgtggaagctgatttcgacgtggaattagctcagcgagggattgtctac 958

                                          
Query: 784 attgatgaagtggacaagataactaagaagg 814
            |||||||||| || ||||| ||||||||||
Sbjct: 959 gttgatgaagttgataagattactaagaagg 989


>gnl|LJGI|TC59225 similar to UniRef100_A7QF37 Cluster: Chromosome chr16 scaffold_86,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_86, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (36%)
          Length = 821

 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                       
Query: 589 atgggtccaacaggttcagggaagacattacttgcaaaaacgctagctcgatttgtcaat 648
           ||||| |||||||| ||||||||||| |||||||| |||||  | ||||| ||||| |||
Sbjct: 745 atggggccaacaggatcagggaagacgttacttgccaaaaccttggctcggtttgtaaat 804

                            
Query: 649 gtcccgtttgtcattgc 665
           ||||| ||||| |||||
Sbjct: 805 gtcccctttgttattgc 821



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 442 aagaaggtgctttctgtggctgtttataaccacta 476
           |||||||||||||||||||| |||||||| |||||
Sbjct: 580 aagaaggtgctttctgtggcagtttataatcacta 614


>gnl|LJGI|TC67655 similar to UniRef100_A7QF37 Cluster: Chromosome chr16 scaffold_86,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_86, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (26%)
          Length = 930

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 442 aagaaggtgctttctgtggctgtttataaccacta 476
           |||||||||||||||||||| |||||||| |||||
Sbjct: 814 aagaaggtgctttctgtggcagtttataatcacta 848