Miyakogusa Predicted Gene

Lj5g3v1201250.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1201250.1 Non Chatacterized Hit- tr|I1KK11|I1KK11_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,85.24,0,coiled-coil,NULL; seg,NULL; Slu7,Pre-mRNA splicing
Prp18-interacting factor; STEP II SPLICING FACTOR,CUFF.54963.1
         (1623 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76179 similar to UniRef100_A7NXC0 Cluster: Chromosome...   246   4e-64
gnl|LJGI|GO010765 homologue to UniRef100_Q9SHY8 Cluster: Pre-mRN...   155   1e-36
gnl|LJGI|TC67323 similar to UniRef100_A7NXC0 Cluster: Chromosome...    66   7e-10

>gnl|LJGI|TC76179 similar to UniRef100_A7NXC0 Cluster: Chromosome chr5 scaffold_2,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr5 scaffold_2, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (51%)
          Length = 907

 Score =  246 bits (124), Expect = 4e-64
 Identities = 562/708 (79%)
 Strand = Plus / Plus

                                                                        
Query: 615  tctaaaggttgatgaagccaaggttgatgagagcaaacaggcggactttgccaaggttga 674
            ||||| ||| ||||| || ||||||||||||||||||||   ||| ||||| ||||||||
Sbjct: 69   tctaagggtagatgaggcaaaggttgatgagagcaaacaaatggattttgcaaaggttga 128

                                                                        
Query: 675  aaagcgtgttagaacaacaggaggtggtagtacaggaactgtaagaaacttgcgtatccg 734
             ||||| ||  | ||||| || ||||| |||||||||||||| || ||| | ||||| ||
Sbjct: 129  gaagcgagtacgtacaactggtggtgggagtacaggaactgtgaggaacctacgtattcg 188

                                                                        
Query: 735  agaggacactgcaaaataccttctgaatcttgatgtcaattctccttattatgatccaaa 794
            |||||| ||||||||||| ||||| |||||||| ||||||||| || |||||||||| ||
Sbjct: 189  agaggatactgcaaaatatcttcttaatcttgaggtcaattctgctcattatgatcccaa 248

                                                                        
Query: 795  aacccattctatgcgagaggatccccttcctgatgctgatcctaatgagaagttctatgg 854
             |||   || ||||| || ||||| ||||| ||||| ||||| ||||||||||| |||  
Sbjct: 249  gaccaggtcaatgcgtgaagatcctcttccagatgcagatccaaatgagaagttttatct 308

                                                                        
Query: 855  aggagacaaccagtatagaatgagtggacaagctttggagttcaagcaacttaacattca 914
             || || ||||| |||||||  ||||| ||||||||||| |||||| ||   ||||| ||
Sbjct: 309  gggtgataaccaatatagaaatagtggtcaagctttggaattcaaggaaggaaacatcca 368

                                                                        
Query: 915  tgcctgggaagcatttgagaaaggccaggatgtccacatacaagctgcaccttcccaagc 974
            ||| |||||||||||||| || || || ||||| || || ||||| || || ||||||||
Sbjct: 369  tgcttgggaagcatttgacaaggggcaagatgttcatatgcaagcagctccatcccaagc 428

                                                                        
Query: 975  tgaattactatataagaattttaagataatgaaagagaagttgaagtcacaaacaaaaga 1034
            |||||| || ||||||||||| ||| | ||||| ||||| |||||||| |||||||| ||
Sbjct: 429  tgaattgctctataagaatttcaaggtcatgaaggagaaattgaagtctcaaacaaagga 488

                                                                        
Query: 1035 tgccataatacagaagtatggaaatgcagcagcccaagaagagcttccaaaggagcttct 1094
            | | ||  |  |||||||||| |||||||| |   | ||  | |||||||  || |||||
Sbjct: 489  tactatcctcgagaagtatggcaatgcagctgatgaggacaaacttccaagagaacttct 548

                                                                        
Query: 1095 tttggggcaaactgagagacaagtcgaatatgatcgcgctggcagaattataaaaggcct 1154
              | || || | |||| | ||||| || |||||||| ||||| |||||||| || || | 
Sbjct: 549  gcttggtcagagtgagggccaagttgagtatgatcgtgctggtagaattattaagggaca 608

                                                                        
Query: 1155 ggaggcatcccttccaaaaagcaagtatgaagaggatgtgtacattaataatcacacaag 1214
            ||| ||| |  | || |  |||||||||||||| ||||| |||||||| || ||||||| 
Sbjct: 609  ggaagcagcagtccccaggagcaagtatgaagaagatgtttacattaacaaccacacaac 668

                                                                        
Query: 1215 catatggggttcatggtggaatgatcatcaatggggatacaaatgttgcaagcaaactat 1274
              | ||||| || |||||||| ||||| |||||||| | ||| ||||||||||| || ||
Sbjct: 669  tgtttggggctcttggtggaaggatcaccaatggggcttcaagtgttgcaagcagacaat 728

                                                            
Query: 1275 acggaacagttactgcactggcgcagcaggaattgaggctgctgaggc 1322
            ||| || || || || || || || || || |||| ||||||||||||
Sbjct: 729  acgtaatagctattgtaccggtgctgctggtattgcggctgctgaggc 776


>gnl|LJGI|GO010765 homologue to UniRef100_Q9SHY8 Cluster: Pre-mRNA-splicing factor
           SLU7-A; n=1; Arabidopsis thaliana|Rep: Pre-mRNA-splicing
           factor SLU7-A - Arabidopsis thaliana (Mouse-ear cress),
           partial (16%)
          Length = 436

 Score =  155 bits (78), Expect = 1e-36
 Identities = 147/170 (86%)
 Strand = Plus / Plus

                                                                       
Query: 46  aaacagattgaattggaagaggcacgtaaagctgggcttgcaccagctgaggtagatgaa 105
           ||||||||||| ||||| || || ||||||||||||||||| ||||||||||| || |||
Sbjct: 89  aaacagattgagttggaggaagcccgtaaagctgggcttgctccagctgaggtggacgaa 148

                                                                       
Query: 106 gatgggaaggagattaaccctcatatcccccaatatatgtcttctgctccatggtatctg 165
           ||||| ||||| || || || ||||| || || ||||||||||| || || |||||||| 
Sbjct: 149 gatggaaaggaaatcaatccccatattccgcagtatatgtcttccgcgccttggtatctt 208

                                                             
Query: 166 aatgctgagaaacctagtctaaaacatcaaaggaaatggaaatctgatcc 215
           |||||||||| ||||||| | ||||||||||||||||||| |||||||||
Sbjct: 209 aatgctgagagacctagtttgaaacatcaaaggaaatggagatctgatcc 258


>gnl|LJGI|TC67323 similar to UniRef100_A7NXC0 Cluster: Chromosome chr5 scaffold_2,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr5 scaffold_2, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (39%)
          Length = 961

 Score = 65.9 bits (33), Expect = 7e-10
 Identities = 120/149 (80%)
 Strand = Plus / Plus

                                                                        
Query: 1174 agcaagtatgaagaggatgtgtacattaataatcacacaagcatatggggttcatggtgg 1233
            |||||||||||||| ||||| |||||||| || |||||||   | ||||| || ||||||
Sbjct: 200  agcaagtatgaagaagatgtttacattaacaaccacacaactgtttggggctcttggtgg 259

                                                                        
Query: 1234 aatgatcatcaatggggatacaaatgttgcaagcaaactatacggaacagttactgcact 1293
            || || || |||||||| | ||| ||||||||||| || ||||| || || || || || 
Sbjct: 260  aaggaccaccaatggggcttcaagtgttgcaagcagacaatacgtaatagctattgtacc 319

                                         
Query: 1294 ggcgcagcaggaattgaggctgctgaggc 1322
            || || || || |||| ||||||||||||
Sbjct: 320  ggtgctgctggtattgcggctgctgaggc 348



 Score = 56.0 bits (28), Expect = 7e-07
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 1390 gaggaaaaaaggcttgctacttggggaactgatgtacctgatga 1433
            ||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct: 416  gaggagaaaaggctggctacatggggaactgatgtccctgatga 459