Miyakogusa Predicted Gene
- Lj5g3v1172180.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1172180.1 tr|G7I3X9|G7I3X9_MEDTR Chloroplastic group IIA
intron splicing facilitator CRS1 OS=Medicago
truncatu,71.48,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
YhbY-like,RNA-binding, CRM domain; CRS1_YhbY,RNA-bi,CUFF.54882.1
(2541 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP063860 similar to UniRef100_A7NX06 Cluster: Chromosom... 591 e-168
>gnl|LJGI|BP063860 similar to UniRef100_A7NX06 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 572
Score = 591 bits (298), Expect = e-168
Identities = 309/312 (99%), Gaps = 2/312 (0%)
Strand = Plus / Minus
Query: 433 agtaccatggataggattgttgaaaaattgaagaagtttgggtatgttgatgggattgag 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agtaccatggataggattgttgaaaaattgaagaagtttgggtatgttgatgggattgag 258
Query: 493 gagcagagtagaacaaaagagagagtaattgaaaaagggtccgttgaggatatattttat 552
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagcagagtagaacnaaagagagagtaattgaaaaagggtccgttgaggatatattttat 198
Query: 553 gtggaggaaggattgttgcctaatacaagaggtgggttttctccagaatctccatttgga 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtggaggaaggattgttgcctaatacaagaggtgggttttctccagaatctccatttgga 138
Query: 613 attggaagtgttggaagtgataatagggtggtgaggtttccatgggagaagccgatggat 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 attggaagtgttggaagtgataatagggtggtgaggtttccatgggagaagccgatggat 78
Query: 673 aacgaggttgaagagacgaggcctcaaaggagaaaaagtaagacatatctcgccgaattg 732
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 77 aacgaggttgaagagacgaggcctcaaaggagaaaaagta--acatatctcgccgaattg 20
Query: 733 actcttcctgag 744
||||||||||||
Sbjct: 19 actcttcctgag 8
Score = 412 bits (208), Expect = e-114
Identities = 213/215 (99%)
Strand = Plus / Minus
Query: 178 agaagaccctccacgagttccacttttattggtgtgaagaaaccaatatttctgtgtaac 237
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 572 agaagaccctccacgagttccacttttattggtgtgaagaaaccgatatttctgtgtaac 513
Query: 238 tcggctaggagtttctgtagtgagagctggttgagacggtggaatgaacccacctgcaaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcggctaggagtttctgtagtgagagctggttgagacggtggaatgaacccacctgcaaa 453
Query: 298 cacaatcgtccgaaaccgccgcgtgcggtgttagattatcaaggttctggaaatgggcat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cacaatcgtccgaaaccgccgcgtgcggtgttagattatcaaggttctggaaatgggcat 393
Query: 358 gagtcaaaatatggttttgaaagctcagatgaaga 392
||||| |||||||||||||||||||||||||||||
Sbjct: 392 gagtcnaaatatggttttgaaagctcagatgaaga 358