Miyakogusa Predicted Gene

Lj5g3v1096020.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1096020.2 tr|C3US34|C3US34_9BRAS At4g21150-like protein
(Fragment) OS=Capsella grandiflora PE=4 SV=1,57.58,0.004,seg,NULL;
Ribophorin_II,Ribophorin II; SUBFAMILY NOT NAMED,NULL; RIBOPHORIN
II,Ribophorin II,CUFF.54770.2
         (600 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81663 similar to UniRef100_A7Q1R4 Cluster: Chromosome...   735   0.0  
gnl|LJGI|TC59793 similar to UniRef100_A7Q1R4 Cluster: Chromosome...   420   e-117
gnl|LJGI|TC57671 similar to UniRef100_A7Q1R4 Cluster: Chromosome...   121   5e-27

>gnl|LJGI|TC81663 similar to UniRef100_A7Q1R4 Cluster: Chromosome chr7 scaffold_44,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_44, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 516

 Score =  735 bits (371), Expect = 0.0
 Identities = 371/371 (100%)
 Strand = Plus / Plus

                                                                       
Query: 161 ataaaatattgggtttagcaaaatttttcctgggcattggaatcccaggagatgctaagg 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaatattgggtttagcaaaatttttcctgggcattggaatcccaggagatgctaagg 60

                                                                       
Query: 221 acttcttcaatcaagttgaatcattagcttttctagagagcaacaggatttccatcccat 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acttcttcaatcaagttgaatcattagcttttctagagagcaacaggatttccatcccat 120

                                                                       
Query: 281 tgatattgtcacttcctgaaacagtttattcattgaccaacaaaggccaagttaaggtta 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatattgtcacttcctgaaacagtttattcattgaccaacaaaggccaagttaaggtta 180

                                                                       
Query: 341 gggtaaatacggtgcttggttcagttgcaccccctctgacagttaaacttgtccaagctt 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gggtaaatacggtgcttggttcagttgcaccccctctgacagttaaacttgtccaagctt 240

                                                                       
Query: 401 ttagcactggtgcaaaagattcagctataattgacaacaaggagctccagtataacaaga 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttagcactggtgcaaaagattcagctataattgacaacaaggagctccagtataacaaga 300

                                                                       
Query: 461 aaagtggattttatttcttggatgctctgcctaagaatgtggatgtcgggacttacgtgt 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaagtggattttatttcttggatgctctgcctaagaatgtggatgtcgggacttacgtgt 360

                      
Query: 521 ttgtttttgag 531
           |||||||||||
Sbjct: 361 ttgtttttgag 371


>gnl|LJGI|TC59793 similar to UniRef100_A7Q1R4 Cluster: Chromosome chr7 scaffold_44,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_44, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (52%)
          Length = 1424

 Score =  420 bits (212), Expect = e-117
 Identities = 212/212 (100%)
 Strand = Plus / Plus

                                                                       
Query: 320 acaaaggccaagttaaggttagggtaaatacggtgcttggttcagttgcaccccctctga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   acaaaggccaagttaaggttagggtaaatacggtgcttggttcagttgcaccccctctga 62

                                                                       
Query: 380 cagttaaacttgtccaagcttttagcactggtgcaaaagattcagctataattgacaaca 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  cagttaaacttgtccaagcttttagcactggtgcaaaagattcagctataattgacaaca 122

                                                                       
Query: 440 aggagctccagtataacaagaaaagtggattttatttcttggatgctctgcctaagaatg 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aggagctccagtataacaagaaaagtggattttatttcttggatgctctgcctaagaatg 182

                                           
Query: 500 tggatgtcgggacttacgtgtttgtttttgag 531
           ||||||||||||||||||||||||||||||||
Sbjct: 183 tggatgtcgggacttacgtgtttgtttttgag 214


>gnl|LJGI|TC57671 similar to UniRef100_A7Q1R4 Cluster: Chromosome chr7 scaffold_44,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_44, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (20%)
          Length = 811

 Score =  121 bits (61), Expect = 5e-27
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                       
Query: 22  gatgatggaaccttttattttgatgagaaacttattagtggacacgagcattggggttct 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gatgatggaaccttttattttgatgagaaacttattagtggacacgagcattggggttct 810

            
Query: 82  c 82
           |
Sbjct: 811 c 811