Miyakogusa Predicted Gene
- Lj5g3v1073870.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1073870.2 tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of
chromosomes protein OS=Glycine max PE=3 SV=1,86.53,0,seg,NULL; SMC
proteins Flexible Hinge Domain,SMCs flexible hinge;
SMC_N,RecF/RecN/SMC; SMC_hinge,SMC,CUFF.54763.2
(1785 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73196 similar to UniRef100_A7Q1S8 Cluster: Chromosome... 1160 0.0
gnl|LJGI|TC75949 similar to UniRef100_A7Q1S8 Cluster: Chromosome... 466 e-130
gnl|LJGI|TC73522 homologue to UniRef100_A7Q1S8 Cluster: Chromoso... 392 e-108
gnl|LJGI|BW614418 similar to UniRef100_A7Q1S8 Cluster: Chromosom... 278 1e-73
>gnl|LJGI|TC73196 similar to UniRef100_A7Q1S8 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 1176
Score = 1160 bits (585), Expect = 0.0
Identities = 585/585 (100%)
Strand = Plus / Plus
Query: 1 atgccgtcgctactctcgccggggaaaatccaccggctagaaatggagaatttcaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgccgtcgctactctcgccggggaaaatccaccggctagaaatggagaatttcaaatcc 417
Query: 61 tacaaaggcttccaagttatcggtcccttctacgacttcaccgccatcatcggccccaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaaaggcttccaagttatcggtcccttctacgacttcaccgccatcatcggccccaac 477
Query: 121 ggcgccggaaaatccaacctcatggacgccataagcttcgttctcggcgtcagaaccggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggcgccggaaaatccaacctcatggacgccataagcttcgttctcggcgtcagaaccggc 537
Query: 181 cagctccgcggcgcgcaactcaaggacctcatctacgccttcgacgacagggagaaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cagctccgcggcgcgcaactcaaggacctcatctacgccttcgacgacagggagaaggag 597
Query: 241 cagagaggacgcagagccttcgtccgcttggtctaccagctcgctaacaactccgagatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cagagaggacgcagagccttcgtccgcttggtctaccagctcgctaacaactccgagatc 657
Query: 301 cagttcacccgaaccatcacctccgccggcgctagcgagtaccgcatcgacggtaacctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cagttcacccgaaccatcacctccgccggcgctagcgagtaccgcatcgacggtaacctt 717
Query: 361 gtcaactgggatatctacaacgccaagctcaaatcactcggtattcttgtcaaggctcgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gtcaactgggatatctacaacgccaagctcaaatcactcggtattcttgtcaaggctcgc 777
Query: 421 aatttcctcgtctttcagggtgatgttgaatctattgcgtcgaagaatccgaaagagcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aatttcctcgtctttcagggtgatgttgaatctattgcgtcgaagaatccgaaagagcta 837
Query: 481 accggccttatcgagcagatatctggctctgacgagctcaagagggactatgagcagttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 accggccttatcgagcagatatctggctctgacgagctcaagagggactatgagcagttt 897
Query: 541 gaagaagaaaaaggcgctgctgaggagaaatcggcgcttatttac 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaagaagaaaaaggcgctgctgaggagaaatcggcgcttatttac 942
Score = 333 bits (168), Expect = 2e-90
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 651 acatctccgcctgcaggagcagctgaaatctgtgaagaaggaacatttcttgtggcagtt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 acatctccgcctgcaggagcagctgaaatctgtgaagaaggaacatttcttgtggcagtt 1067
Query: 711 gttcaatatagaaaatgatattacgaaaacaactgaggatcttgaagatgagaccaaaag 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 gttcaatatagaaaatgatattacgaaaacaactgaggatcttgaagatgagaccaaaag 1127
Query: 771 tcgtctagctgttattgaagagctgggaaattttgaaaatgaagcaag 818
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 tcgtctagctgttattgaagagctgggaaattttgaaaatgaagcaag 1175
>gnl|LJGI|TC75949 similar to UniRef100_A7Q1S8 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 686
Score = 466 bits (235), Expect = e-130
Identities = 352/395 (89%), Gaps = 5/395 (1%)
Strand = Plus / Plus
Query: 651 acatctccgcctgcaggagca-gctga-aatctgtgaagaaggaacatttcttgtggcag 708
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 292 acatctccgcctgcaggagcacgctgacaatctgtgaagaaggaacatttcttgtggcag 351
Query: 709 ttgttcaatatagaaaatgatattacgaaaacaactgaggat-cttgaagatgagaccaa 767
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 352 ttgttcaatatagaaaatgatattacgaaaaccactgaggatgcttgaagatgagaccaa 411
Query: 768 aagtcgtctagctgttattgaagag-ctgggaaattttgaaaatgaagcaagtnnnnnnn 826
| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 412 acgtcgtctagctgttattgaagagactgggaaattttgaaaatgaagcaagtaaaaaga 471
Query: 827 nnnnngagcaggccaaatatcttaaagaaattgcgctacgtgaaaagaaaattactgaga 886
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 472 aaaaagagcaggcccaatatcttaaagaaattgcgctacgtgaaaagacaattactgaga 531
Query: 887 aaagcaacaaacttgacaagagtcaacctgagctt-ctgaagttaaaggaggaaatgact 945
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 532 aaagcaaccaacttgaccagagtcaacctgagcttgctgaagttaaaggaggaaatgact 591
Query: 946 cgtatcaattcnnnnnnnnnnnnngggaagaaggaacttgatnnnnnnngggaagaacgg 1005
||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 592 cgtatcaattcaaaaataaaaaaagggaagaaggaacttgataaaaaaagggaagaacgg 651
Query: 1006 aggaggcatgctgctgatatagcggagctacaaag 1040
|||||||||||||||||||||||||||||||||||
Sbjct: 652 aggaggcatgctgctgatatagcggagctacaaag 686
Score = 444 bits (224), Expect = e-124
Identities = 224/224 (100%)
Strand = Plus / Plus
Query: 362 tcaactgggatatctacaacgccaagctcaaatcactcggtattcttgtcaaggctcgca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaactgggatatctacaacgccaagctcaaatcactcggtattcttgtcaaggctcgca 60
Query: 422 atttcctcgtctttcagggtgatgttgaatctattgcgtcgaagaatccgaaagagctaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttcctcgtctttcagggtgatgttgaatctattgcgtcgaagaatccgaaagagctaa 120
Query: 482 ccggccttatcgagcagatatctggctctgacgagctcaagagggactatgagcagtttg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccggccttatcgagcagatatctggctctgacgagctcaagagggactatgagcagtttg 180
Query: 542 aagaagaaaaaggcgctgctgaggagaaatcggcgcttatttac 585
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaagaaaaaggcgctgctgaggagaaatcggcgcttatttac 224
>gnl|LJGI|TC73522 homologue to UniRef100_A7Q1S8 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 482
Score = 392 bits (198), Expect = e-108
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 1 atgccgtcgctactctcgccggggaaaatccaccggctagaaatggagaatttcaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atgccgtcgctactctcgccggggaaaatccaccggctagaaatggagaatttcaaatcc 344
Query: 61 tacaaaggcttccaagttatcggtcccttctacgacttcaccgccatcatcggccccaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tacaaaggcttccaagttatcggtcccttctacgacttcaccgccatcatcggccccaac 404
Query: 121 ggcgccggaaaatccaacctcatggacgccataagcttcgttctcggcgtcagaaccggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggcgccggaaaatccaacctcatggacgccataagcttcgttctcggcgtcagaaccggc 464
Query: 181 cagctccgcggcgcgcaa 198
||||||||||||||||||
Sbjct: 465 cagctccgcggcgcgcaa 482
>gnl|LJGI|BW614418 similar to UniRef100_A7Q1S8 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 488
Score = 278 bits (140), Expect = 1e-73
Identities = 143/144 (99%)
Strand = Plus / Plus
Query: 174 aaccggccagctccgcggcgcgcaactcaaggacctcatctacgccttcgacgacaggga 233
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaccggcctgctccgcggcgcgcaactcaaggacctcatctacgccttcgacgacaggga 404
Query: 234 gaaggagcagagaggacgcagagccttcgtccgcttggtctaccagctcgctaacaactc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaaggagcagagaggacgcagagccttcgtccgcttggtctaccagctcgctaacaactc 464
Query: 294 cgagatccagttcacccgaaccat 317
||||||||||||||||||||||||
Sbjct: 465 cgagatccagttcacccgaaccat 488
Score = 210 bits (106), Expect = 2e-53
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 atgccgtcgctactctcgccggggaaaatccaccggctagaaatggagaatttcaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atgccgtcgctactctcgccggggaaaatccaccggctagaaatggagaatttcaaatcc 299
Query: 61 tacaaaggcttccaagttatcggtcccttctacgacttcaccgcca 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tacaaaggcttccaagttatcggtcccttctacgacttcaccgcca 345