Miyakogusa Predicted Gene
- Lj5g3v1015780.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1015780.1 tr|D7LYD9|D7LYD9_ARALL Prenylated rab receptor 2
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_9,40.27,4e-19,PRA1,Prenylated rab acceptor PRA1;
seg,NULL; PRENYLATED RAB ACCEPTOR 1-RELATED,NULL,CUFF.54673.1
(591 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73593 weakly similar to UniRef100_A7PE93 Cluster: Chr... 846 0.0
gnl|LJGI|DC594685 74 1e-12
gnl|LJGI|TC76164 weakly similar to UniRef100_A7QVP3 Cluster: Chr... 72 4e-12
>gnl|LJGI|TC73593 weakly similar to UniRef100_A7PE93 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (57%)
Length = 493
Score = 846 bits (427), Expect = 0.0
Identities = 427/427 (100%)
Strand = Plus / Plus
Query: 1 atgtcttcaccccgttacagttccctcccttcaacttcaacctcaccttcccactacccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 atgtcttcaccccgttacagttccctcccttcaacttcaacctcaccttcccactacccc 126
Query: 61 ttctcacgcgccaccaacgcctccaatttccccacgcgccgcccctgggaagaattcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ttctcacgcgccaccaacgcctccaatttccccacgcgccgcccctgggaagaattcttc 186
Query: 121 accctccactccctcacccgcccttactccctcggcgaagcctccctccgcgtgaagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 accctccactccctcacccgcccttactccctcggcgaagcctccctccgcgtgaagcac 246
Query: 181 aacctccgccacttcctcggcaactacaccatggtcctcctcttcatcctcttcgtctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aacctccgccacttcctcggcaactacaccatggtcctcctcttcatcctcttcgtctcc 306
Query: 241 ctcatctggcaccccgtctccatcatcgtcttcctcgccgtcttcctcgcctggttcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctcatctggcaccccgtctccatcatcgtcttcctcgccgtcttcctcgcctggttcttc 366
Query: 301 ctcttcttcttccgcgaccgccctgtcgttgtcctctcccgcaccgtcgattaccgtttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctcttcttcttccgcgaccgccctgtcgttgtcctctcccgcaccgtcgattaccgtttc 426
Query: 361 atcctcgccgcgctctgggttgttaccgttgttgcgctcgttctcaccagagtttggctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atcctcgccgcgctctgggttgttaccgttgttgcgctcgttctcaccagagtttggctc 486
Query: 421 aatgtcc 427
|||||||
Sbjct: 487 aatgtcc 493
>gnl|LJGI|DC594685
Length = 555
Score = 73.8 bits (37), Expect = 1e-12
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 88 ttccccacgcgccgcccctgggaagaattcttcaccctccactccctcacccgcccttac 147
||||||||||||||||| ||||| ||| ||||| | ||| |||| |||| ||||| |||
Sbjct: 239 ttccccacgcgccgcccatgggaggaagtcttcgcgctctactcattcacgcgcccctac 298
Query: 148 tccctcggcgaagcctccctccgcgtgaagcacaacctccgccacttcc 196
||||||||||||||| | |||||||||| ||||||| ||||||||
Sbjct: 299 tccctcggcgaagccaggttgcgcgtgaagcgcaacctcacccacttcc 347
>gnl|LJGI|TC76164 weakly similar to UniRef100_A7QVP3 Cluster: Chromosome chr14
scaffold_190, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_190, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (75%)
Length = 1039
Score = 71.9 bits (36), Expect = 4e-12
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 247 tggcaccccgtctccatcatcgtcttcctcgccgtcttcctcgcctggttcttcctcttc 306
||||||||||||||||| ||||||||||| | | || |||||||||||||||||| |
Sbjct: 334 tggcaccccgtctccatgatcgtcttcctgatcctgctcgtcgcctggttcttcctctac 393
Query: 307 ttcttccgcgaccgccctgtcgttgtcctctcccgcaccgtcga 350
|||| ||||||| |||| |||| |||||| ||| ||||||||
Sbjct: 394 ttctcccgcgacggcccactcgtcgtcctcaaccgaaccgtcga 437