Miyakogusa Predicted Gene
- Lj5g3v1015150.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1015150.1 Non Chatacterized Hit- tr|I1GQB1|I1GQB1_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,31.34,2e-18,no
description,Nucleic acid-binding, OB-fold; SSB,Primosome
PriB/single-strand DNA-binding; SINGLE-S,gene.g60977.t1.1
(1128 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72467 similar to UniRef100_A7PUL0 Cluster: Chromosome... 1667 0.0
gnl|LJGI|DC595602 similar to UniRef100_A7PUL0 Cluster: Chromosom... 670 0.0
gnl|LJGI|BP048760 similar to UniRef100_A7NTP7 Cluster: Chromosom... 64 2e-09
>gnl|LJGI|TC72467 similar to UniRef100_A7PUL0 Cluster: Chromosome chr7 scaffold_31,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_31, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (60%)
Length = 1230
Score = 1667 bits (841), Expect = 0.0
Identities = 885/904 (97%), Gaps = 18/904 (1%)
Strand = Plus / Plus
Query: 225 gagcaagaggaagcagaactcagaggtaatgcaaatggcgatagaacaagcactatcatc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gagcaagaggaagcagaactcagaggtaatgcaaatggcgatagaacaagcactatcatc 70
Query: 285 atcaacaacaaccaccttcagaaaccttctaaccttccccaaaaccccaatttcaaaacc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atcaacaacaaccaccttcagaaaccttctaaccttccccaaaaccccaatttcaaaacc 130
Query: 345 caaattccagttcccatgttctccatcacactccaatttgaagttgaagttgaagttcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 caaattccagttcccatgttctccatcacactccaatttgaagttgaagttgaagttcaa 190
Query: 405 atgctcctccatgtccaccaatgcatcctaccctaaaccctcggaaatcccgtggcagaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atgctcctccatgtccaccaatgcatcctaccctaaaccctcggaaatcccgtggcagaa 250
Query: 465 ggagctctgcaactccgtcagcctcatcggcaccgtcggcgcccccgtcgaaatcaagca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggagctctgcaactccgtcagcctcatcggcaccgtcggcgcccccgtcgaaatcaagca 310
Query: 525 cttcccctccggcaaggtcgcttcctggacccgcctcgccgtcaagaaaaacgccaccca 584
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 311 cttcccctccggcaaggtcgcttcctggacccacctcgccgtcaagaaaaacgccaccca 370
Query: 585 gacttcgtgggttaatctcacgttctgggatgaacttgctcatgttgcttttcagcatgt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gacttcgtgggttaatctcacgttctgggatgaacttgctcatgttgcttttcagcatgt 430
Query: 645 ccagaaaggtcaccagattcatgtctctggtcgcctcgtcgctgacaccgtcgaaaccga 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ccagaaaggtcaccagattcatgtctctggtcgcctcgtcgctgacaccgtcgaaaccga 490
Query: 705 tgaagggaaacagcaaacctactataaggtggttgctcaggagctgaatttcattgatag 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgaagggaaacagcaaacctactataaggtggttgctcaggagctgaatttcattgatag 550
Query: 765 gagcttctcacaagtgaattctcaggatcaggactctgatttcatgatgtctggcaatgg 824
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gagcttctcacaagtgaattctcaggatcaggactctgatttcatgatgtctggcaatg- 609
Query: 825 caagtcatatatgttcagtagaaaagcggggtatgctgcaaatagtactgggtctgtgat 884
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 -----------------gtagaaaagcggggtatgctgcaaatagtactgggtctgtgat 652
Query: 885 ggaattgtggcaagctttctttgctaacccaggggagtggtgggacaatagaaacaaaaa 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ggaattgtggcaagctttctttgctaacccaggggagtggtgggacaatagaaacaaaaa 712
Query: 945 gaggaacccgaaagcgcctgattttaagcacaaagatactggagaagctctgtggatcga 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaggaacccgaaagcgcctgattttaagcacaaagatactggagaagctctgtggatcga 772
Query: 1005 aggtagatccactccatcatgggtcaattcccaactggagataatggactcaaggatggg 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aggtagatccactccatcatgggtcaattcccaactggagataatggactcaaggatggg 832
Query: 1065 gtcgtttacaggtcaaaggatgcctgtagatatggtgacaacagatgaaatcttctctcg 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gtcgtttacaggtcaaaggatgcctgtagatatggtgacaacagatgaaatcttctctcg 892
Query: 1125 ctaa 1128
||||
Sbjct: 893 ctaa 896
>gnl|LJGI|DC595602 similar to UniRef100_A7PUL0 Cluster: Chromosome chr7 scaffold_31,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_31, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (35%)
Length = 373
Score = 670 bits (338), Expect = 0.0
Identities = 366/374 (97%), Gaps = 1/374 (0%)
Strand = Plus / Plus
Query: 263 cgatagaacaagcactatcatcatcaacaacaaccaccttcagaaaccttctaaccttcc 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgatagaacaagcactatcatcatcaacaacaaccaccttcagaaaccttctaaccttcc 60
Query: 323 ccaaaaccccaatttcaaaacccaaattccagttcccatgttctccatcacactccaatt 382
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 61 ccaaaaccccaatttcaaaacccaaattccagttcccatgttctccatcgggggc-aatt 119
Query: 383 tgaagttgaagttgaagttcaaatgctcctccatgtccaccaatgcatcctaccctaaac 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgaagttgaagttgaagttcaaatgctcctccatgtccaccaatgcatcctaccctaaac 179
Query: 443 cctcggaaatcccgtggcagaaggagctctgcaactccgtcagcctcatcggcaccgtcg 502
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cctccgaaatcccgtggcagaaggagctctgcaactccgtcagcctcatcggcaccgtcg 239
Query: 503 gcgcccccgtcgaaatcaagcacttcccctccggcaaggtcgcttcctggacccgcctcg 562
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 240 gcgcccccgtcgaaatcaagcacttcccctccggcaaggtcgcttcctggacccacctcg 299
Query: 563 ccgtcaagaaaaacgccacccagacttcgtgggttaatctcacgttctgggatgaacttg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccgtcaagaaaaacgccacccagacttcgtgggttaatctcacgttctgggatgaacttg 359
Query: 623 ctcatgttgctttt 636
||||||||||||||
Sbjct: 360 ctcatgttgctttt 373
>gnl|LJGI|BP048760 similar to UniRef100_A7NTP7 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 555
Score = 63.9 bits (32), Expect = 2e-09
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 960 gcctgattttaagcacaaagatactggagaagctctgtgg 999
|||||||||||||||||| |||||||| ||||||||||||
Sbjct: 467 gcctgattttaagcacaaggatactggtgaagctctgtgg 428