Miyakogusa Predicted Gene

Lj5g3v1003380.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1003380.1 tr|G7IDL0|G7IDL0_MEDTR Centromere protein
OS=Medicago truncatula GN=MTR_1g071540 PE=4
SV=1,77.78,0,KIP1,KIP1-like; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL; coiled-coil,NULL,CUFF.54549.1
         (4035 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP043204 homologue to UniRef100_A7NWS4 Cluster: Chromos...   349   9e-95
gnl|LJGI|TC76048 similar to UniRef100_A7PTZ5 Cluster: Chromosome...    54   7e-06
gnl|LJGI|TC71834 similar to UniRef100_A7PTZ5 Cluster: Chromosome...    54   7e-06

>gnl|LJGI|BP043204 homologue to UniRef100_A7NWS4 Cluster: Chromosome chr5 scaffold_2,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr5 scaffold_2, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (4%)
          Length = 563

 Score =  349 bits (176), Expect = 9e-95
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgagtcttcctcattcaggttctaggagaatgtattcatggtggtgggacagccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atggcgagtcttcctcattcaggttctaggagaatgtattcatggtggtgggacagccac 447

                                                                       
Query: 61  ataagccctaagaactcaaaatggctccaagaaaatctgacagatatggatgtcaaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ataagccctaagaactcaaaatggctccaagaaaatctgacagatatggatgtcaaggtg 507

                                                                   
Query: 121 aagcaaatgattaagcttattgaagaagatgcagattcctttgccaggagagcaga 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagcaaatgattaagcttattgaagaagatgcagattcctttgccaggagagcaga 563


>gnl|LJGI|TC76048 similar to UniRef100_A7PTZ5 Cluster: Chromosome chr7 scaffold_31,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_31, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (36%)
          Length = 835

 Score = 54.0 bits (27), Expect = 7e-06
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 139 attgaagaagatgcagattcctttgcc 165
           |||||||||||||||||||||||||||
Sbjct: 296 attgaagaagatgcagattcctttgcc 322


>gnl|LJGI|TC71834 similar to UniRef100_A7PTZ5 Cluster: Chromosome chr7 scaffold_31,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_31, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (36%)
          Length = 1106

 Score = 54.0 bits (27), Expect = 7e-06
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 139 attgaagaagatgcagattcctttgcc 165
           |||||||||||||||||||||||||||
Sbjct: 204 attgaagaagatgcagattcctttgcc 230