Miyakogusa Predicted Gene
- Lj5g3v0975900.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0975900.2 Non Chatacterized Hit- tr|I3T9W4|I3T9W4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.31,0,RNA
polymerase subunit,RNA polymerase, Rpb8; DNA-DIRECTED RNA POLYMERASES
I, II, AND III SUBUNIT RPA,CUFF.54466.2
(435 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59182 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA... 862 0.0
gnl|LJGI|TC62125 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA... 688 0.0
gnl|LJGI|TC58624 weakly similar to UniRef100_A7QAN3 Cluster: Chr... 688 0.0
gnl|LJGI|TC59922 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA... 349 9e-96
>gnl|LJGI|TC59182 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA polymerase I, II
and III subunit RPB8; n=2; Manihot esculenta|Rep: RNA
polymerase I, II and III subunit RPB8 - Manihot
esculenta (Cassava) (Manioc), partial (93%)
Length = 916
Score = 862 bits (435), Expect = 0.0
Identities = 435/435 (100%)
Strand = Plus / Plus
Query: 1 atggttgagattctctttgacgatatctttagagtggaaaaattaaacccagatgacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 atggttgagattctctttgacgatatctttagagtggaaaaattaaacccagatgacaag 282
Query: 61 aaattatttgagaaagttacccgcattgaagcaagaagtgaaagatttgacatgtttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaattatttgagaaagttacccgcattgaagcaagaagtgaaagatttgacatgtttatg 342
Query: 121 cacctagacatcaattctgagttatatccgttaaaggtgggtcagaaattcgctctttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cacctagacatcaattctgagttatatccgttaaaggtgggtcagaaattcgctctttta 402
Query: 181 ctggttccaacactgaatccagatggtaccccagacactggctactatattccgggcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctggttccaacactgaatccagatggtaccccagacactggctactatattccgggcaat 462
Query: 241 cggcaatcactggctgataattttgaatatgttatgtatggcaagctctacaagatatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cggcaatcactggctgataattttgaatatgttatgtatggcaagctctacaagatatca 522
Query: 301 gaaggttcaggacgtgaaaaagcggagttaaatatttcatttggtgggcttctgatgatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaaggttcaggacgtgaaaaagcggagttaaatatttcatttggtgggcttctgatgatg 582
Query: 361 atgaagggagatcactctcattgcaacaagtttgagcttgatcaaaggttgtatcttctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atgaagggagatcactctcattgcaacaagtttgagcttgatcaaaggttgtatcttctg 642
Query: 421 atgaggaaagtctga 435
|||||||||||||||
Sbjct: 643 atgaggaaagtctga 657
>gnl|LJGI|TC62125 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA polymerase I, II
and III subunit RPB8; n=2; Manihot esculenta|Rep: RNA
polymerase I, II and III subunit RPB8 - Manihot
esculenta (Cassava) (Manioc), partial (93%)
Length = 731
Score = 688 bits (347), Expect = 0.0
Identities = 413/435 (94%)
Strand = Plus / Plus
Query: 1 atggttgagattctctttgacgatatctttagagtggaaaaattaaacccagatgacaag 60
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 149 atggttgagattctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 208
Query: 61 aaattatttgagaaagttacccgcattgaagcaagaagtgaaagatttgacatgtttatg 120
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 209 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 268
Query: 121 cacctagacatcaattctgagttatatccgttaaaggtgggtcagaaattcgctctttta 180
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 269 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 328
Query: 181 ctggttccaacactgaatccagatggtaccccagacactggctactatattccgggcaat 240
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct: 329 ttggttccgacactgaatccagatggcaccccagacactggctactatgttccgggaaat 388
Query: 241 cggcaatcactggctgataattttgaatatgttatgtatggcaagctctacaagatatca 300
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 389 cggcaatcactggccgataattttgaatatgtcatgtatgggaagctctacaagatatca 448
Query: 301 gaaggttcaggacgtgaaaaagcggagttaaatatttcatttggtgggcttctgatgatg 360
|||||||| || ||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct: 449 gaaggttctgggcgtgaaaaagcggagctgaatatttcatttggtgggcttctaatgatg 508
Query: 361 atgaagggagatcactctcattgcaacaagtttgagcttgatcaaaggttgtatcttctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atgaagggagatcactctcattgcaacaagtttgagcttgatcaaaggttgtatcttctg 568
Query: 421 atgaggaaagtctga 435
|||||||||||||||
Sbjct: 569 atgaggaaagtctga 583
>gnl|LJGI|TC58624 weakly similar to UniRef100_A7QAN3 Cluster: Chromosome chr5
scaffold_72, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_72, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (79%)
Length = 815
Score = 688 bits (347), Expect = 0.0
Identities = 413/435 (94%)
Strand = Plus / Plus
Query: 1 atggttgagattctctttgacgatatctttagagtggaaaaattaaacccagatgacaag 60
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 131 atggttgagattctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 190
Query: 61 aaattatttgagaaagttacccgcattgaagcaagaagtgaaagatttgacatgtttatg 120
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 191 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 250
Query: 121 cacctagacatcaattctgagttatatccgttaaaggtgggtcagaaattcgctctttta 180
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 251 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 310
Query: 181 ctggttccaacactgaatccagatggtaccccagacactggctactatattccgggcaat 240
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct: 311 ttggttccgacactgaatccagatggcaccccagacactggctactatgttccgggaaat 370
Query: 241 cggcaatcactggctgataattttgaatatgttatgtatggcaagctctacaagatatca 300
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 371 cggcaatcactggccgataattttgaatatgtcatgtatgggaagctctacaagatatca 430
Query: 301 gaaggttcaggacgtgaaaaagcggagttaaatatttcatttggtgggcttctgatgatg 360
|||||||| || ||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct: 431 gaaggttctgggcgtgaaaaagcggagctgaatatttcatttggtgggcttctaatgatg 490
Query: 361 atgaagggagatcactctcattgcaacaagtttgagcttgatcaaaggttgtatcttctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atgaagggagatcactctcattgcaacaagtttgagcttgatcaaaggttgtatcttctg 550
Query: 421 atgaggaaagtctga 435
|||||||||||||||
Sbjct: 551 atgaggaaagtctga 565
>gnl|LJGI|TC59922 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA polymerase I, II
and III subunit RPB8; n=2; Manihot esculenta|Rep: RNA
polymerase I, II and III subunit RPB8 - Manihot
esculenta (Cassava) (Manioc), partial (68%)
Length = 745
Score = 349 bits (176), Expect = 9e-96
Identities = 221/236 (93%)
Strand = Plus / Plus
Query: 1 atggttgagattctctttgacgatatctttagagtggaaaaattaaacccagatgacaag 60
|||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 120 atggttgagactctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 179
Query: 61 aaattatttgagaaagttacccgcattgaagcaagaagtgaaagatttgacatgtttatg 120
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 180 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 239
Query: 121 cacctagacatcaattctgagttatatccgttaaaggtgggtcagaaattcgctctttta 180
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 240 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 299
Query: 181 ctggttccaacactgaatccagatggtaccccagacactggctactatattccggg 236
||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct: 300 ttggttccgacactgaatccagatggcaccccaggcactggctactatgttccggg 355
Score = 200 bits (101), Expect = 5e-51
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 331 aatatttcatttggtgggcttctgatgatgatgaagggagatcactctcattgcaacaag 390
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatatttcatttggtgggcttctaatgatgatgaagggagatcactctcattgcaacaag 420
Query: 391 tttgagcttgatcaaaggttgtatcttctgatgaggaaagtctga 435
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttgagcttgatcaaaggttgtatcttctgatgaggaaagtctga 465