Miyakogusa Predicted Gene

Lj5g3v0942170.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0942170.1 Non Chatacterized Hit- tr|B9SQT4|B9SQT4_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,43.55,1e-17,seg,NULL,CUFF.54333.1
         (459 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81499                                                      317   3e-86
gnl|LJGI|TC78157                                                      222   1e-57

>gnl|LJGI|TC81499 
          Length = 519

 Score =  317 bits (160), Expect = 3e-86
 Identities = 160/160 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccatctattgtcaaagtgccaaagtgttatgtgccgaatgtaccaattccacgagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atgccatctattgtcaaagtgccaaagtgttatgtgccgaatgtaccaattccacgagca 419

                                                                       
Query: 61  cctgtaactgaaaattttggggatagcagtttgacatctgattcctcaggatctgcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cctgtaactgaaaattttggggatagcagtttgacatctgattcctcaggatctgcagga 479

                                                   
Query: 121 ccggagaaggatggtagtactgatgaggataaagcaaata 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccggagaaggatggtagtactgatgaggataaagcaaata 519


>gnl|LJGI|TC78157 
          Length = 393

 Score =  222 bits (112), Expect = 1e-57
 Identities = 126/133 (94%)
 Strand = Plus / Plus

                                                                       
Query: 327 tgctgaggttcctccagacaccagaaaatccaaggagcctgggtctaaggaaaaaactga 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgctgaggttcctccagacaccagaaaatccaaggagcctgggtctaaggaaaaaactga 60

                                                                       
Query: 387 tcctgtagagnnnnnnngggtccataaaggaagcgtaaaatcggaaaatgtgcctaggaa 446
           ||||||||||       |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcctgtagagaaaaaaagggtccataaaggaagcgtaaaatcggaaaatgtgcctaggaa 120

                        
Query: 447 ctggaagttttaa 459
           |||||||||||||
Sbjct: 121 ctggaagttttaa 133