Miyakogusa Predicted Gene
- Lj5g3v0931390.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0931390.1 tr|F2E4F7|F2E4F7_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,43.9,4e-19,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.54349.1
(459 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57979 similar to UniRef100_A7QJJ9 Cluster: Chromosome... 910 0.0
gnl|LJGI|TC70688 similar to UniRef100_Q66GM7 Cluster: At5g04090;... 835 0.0
gnl|LJGI|GO010714 similar to UniRef100_Q66GM7 Cluster: At5g04090... 739 0.0
>gnl|LJGI|TC57979 similar to UniRef100_A7QJJ9 Cluster: Chromosome chr8 scaffold_106,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_106, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (47%)
Length = 1380
Score = 910 bits (459), Expect = 0.0
Identities = 459/459 (100%)
Strand = Plus / Plus
Query: 1 atgtttagtaatgatgtgtcatcgctcaacactagtatgcatgctgtggttgagatgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atgtttagtaatgatgtgtcatcgctcaacactagtatgcatgctgtggttgagatgtct 643
Query: 61 gctcatgcaaacaggattgccagtccttcaagcatgcgttcagctcaaagctcaagtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gctcatgcaaacaggattgccagtccttcaagcatgcgttcagctcaaagctcaagtatg 703
Query: 121 ggtttgatacaagggattaatggggggatgatcaaatcggaacctggatattcaggtagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggtttgatacaagggattaatggggggatgatcaaatcggaacctggatattcaggtagt 763
Query: 181 ccttcatacatttttggtcctgatagcactgtcctggatgcatgcccaactattggtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ccttcatacatttttggtcctgatagcactgtcctggatgcatgcccaactattggtgat 823
Query: 241 ggaacggttacatcattcactagtgtaaactcaaactctcattctatgaatggggccctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ggaacggttacatcattcactagtgtaaactcaaactctcattctatgaatggggccctc 883
Query: 301 ctggatctagacatttcttcatttggagttttggggcagatttctagaaatctcagcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ctggatctagacatttcttcatttggagttttggggcagatttctagaaatctcagcctt 943
Query: 361 tcagatctgactgctgatttttctcagagctctgacataatggagagctatccaaggtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 tcagatctgactgctgatttttctcagagctctgacataatggagagctatccaaggtgt 1003
Query: 421 ccctacctggctactaatgagaacttccttgaaagttga 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 ccctacctggctactaatgagaacttccttgaaagttga 1042
>gnl|LJGI|TC70688 similar to UniRef100_Q66GM7 Cluster: At5g04090; n=1; Arabidopsis
thaliana|Rep: At5g04090 - Arabidopsis thaliana
(Mouse-ear cress), partial (42%)
Length = 1125
Score = 835 bits (421), Expect = 0.0
Identities = 428/429 (99%), Gaps = 1/429 (0%)
Strand = Plus / Plus
Query: 32 ctagtatgcatgctgtggttgagatgtctgctcatgcaaacaggattgccagtccttcaa 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctagtatgcatgctgtggttgagatgtctgctcatgcaaacaggattgccagtccttcaa 480
Query: 92 gcatgcgttcagctcaaagctcaagtatgggtttgatacaagggattaatgggg-ggatg 150
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 481 gcatgcgttcagctcaaagctcaagtatgggtttgatacaagggattaatgggggggatg 540
Query: 151 atcaaatcggaacctggatattcaggtagtccttcatacatttttggtcctgatagcact 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcaaatcggaacctggatattcaggtagtccttcatacatttttggtcctgatagcact 600
Query: 211 gtcctggatgcatgcccaactattggtgatggaacggttacatcattcactagtgtaaac 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtcctggatgcatgcccaactattggtgatggaacggttacatcattcactagtgtaaac 660
Query: 271 tcaaactctcattctatgaatggggccctcctggatctagacatttcttcatttggagtt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcaaactctcattctatgaatggggccctcctggatctagacatttcttcatttggagtt 720
Query: 331 ttggggcagatttctagaaatctcagcctttcagatctgactgctgatttttctcagagc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttggggcagatttctagaaatctcagcctttcagatctgactgctgatttttctcagagc 780
Query: 391 tctgacataatggagagctatccaaggtgtccctacctggctactaatgagaacttcctt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tctgacataatggagagctatccaaggtgtccctacctggctactaatgagaacttcctt 840
Query: 451 gaaagttga 459
|||||||||
Sbjct: 841 gaaagttga 849
>gnl|LJGI|GO010714 similar to UniRef100_Q66GM7 Cluster: At5g04090; n=1; Arabidopsis
thaliana|Rep: At5g04090 - Arabidopsis thaliana
(Mouse-ear cress), partial (24%)
Length = 755
Score = 739 bits (373), Expect = 0.0
Identities = 380/381 (99%), Gaps = 1/381 (0%)
Strand = Plus / Plus
Query: 1 atgtttagtaatgatgtgtcatcgctcaacactagtatgcatgctgtggttgagatgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atgtttagtaatgatgtgtcatcgctcaacactagtatgcatgctgtggttgagatgtct 433
Query: 61 gctcatgcaaacaggattgccagtccttcaagcatgcgttcagctcaaagctcaagtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gctcatgcaaacaggattgccagtccttcaagcatgcgttcagctcaaagctcaagtatg 493
Query: 121 ggtttgatacaagggattaatggggggatgatcaaatcggaacctggatattcaggtagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggtttgatacaagggattaatggggggatgatcaaatcggaacctggatattcaggtagt 553
Query: 181 ccttcatacatttttggtcctgatagcactgtcctggatgcatgcccaactattggtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ccttcatacatttttggtcctgatagcactgtcctggatgcatgcccaactattggtgat 613
Query: 241 ggaacggttacatcattcactagtgtaaactcaaactctcattctatgaatggggccctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggaacggttacatcattcactagtgtaaactcaaactctcattctatgaatggggccctc 673
Query: 301 ctggatctagacatttcttcatttggagttttggggcagatttctagaaatctcagcctt 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctggatctagaca-ttcttcatttggagttttggggcagatttctagaaatctcagcctt 732
Query: 361 tcagatctgactgctgatttt 381
|||||||||||||||||||||
Sbjct: 733 tcagatctgactgctgatttt 753