Miyakogusa Predicted Gene
- Lj5g3v0921030.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0921030.1 Non Chatacterized Hit- tr|I1NY64|I1NY64_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1,64.71,6e-17,zinc
finger,Zinc finger, CCCH-type; K homology RNA-binding domain,K
Homology domain; no description,,CUFF.54231.1
(777 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67654 similar to UniRef100_A7PVV6 Cluster: Chromosome... 147 1e-34
gnl|LJGI|TC81076 similar to UniRef100_A7PVV6 Cluster: Chromosome... 119 3e-26
gnl|LJGI|TC73814 similar to UniRef100_A7P000 Cluster: Chromosome... 82 6e-15
>gnl|LJGI|TC67654 similar to UniRef100_A7PVV6 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (81%)
Length = 1281
Score = 147 bits (74), Expect = 1e-34
Identities = 188/226 (83%)
Strand = Plus / Plus
Query: 323 ctcctcctggtcttgcttctagctttggtgccagttcgaaggccaagattagtgtaaaag 382
|||||||||||| |||| | |||||||||||| | | | || ||||| || || |||
Sbjct: 653 ctcctcctggtcctgctacaggctttggtgccaatgccactgctaagatcagcgtggaag 712
Query: 383 cttccttggccggagctatcattgggaaaggaggtgagaactcgaagcagatatgctacc 442
|||| |||||||||| ||||||||||| || |||| |||||| |||||||| || |
Sbjct: 713 cttcgctggccggagcaatcattgggaagggtggtgtgaactcaaagcagatttgtcgtc 772
Query: 443 aaactggagccaaactttcaattcgagagcatgaatctgatccaaatcttagaaatattg 502
|||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 773 aaactggagccaaactatcaattcgagagcacgagtctgatccaaatcttagaaacattg 832
Query: 503 aactcgtgggaagctttgaacaaatcgagaatgcaagtaacatggt 548
|||| | |||||||||||| ||||| || | || |||||||||||
Sbjct: 833 aacttgagggaagctttgatcaaattaaggaagctagtaacatggt 878
Score = 119 bits (60), Expect = 3e-26
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 61 aagcaagaaatggagtccttatcaactggtgtaggaagcaaattggagccatgtaccaag 120
||||||||| ||||||| |||||| |||||||||||||||||| | ||||||||||||||
Sbjct: 250 aagcaagaattggagtcattatcatctggtgtaggaagcaaatcgaagccatgtaccaag 309
Query: 121 tttttcagcactgcaggttgcccattcggtga 152
|||||||||||||| || |||||||| |||||
Sbjct: 310 tttttcagcactgctggctgcccatttggtga 341
>gnl|LJGI|TC81076 similar to UniRef100_A7PVV6 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 475
Score = 119 bits (60), Expect = 3e-26
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 61 aagcaagaaatggagtccttatcaactggtgtaggaagcaaattggagccatgtaccaag 120
||||||||| ||||||| |||||| |||||||||||||||||| | ||||||||||||||
Sbjct: 284 aagcaagaattggagtcattatcatctggtgtaggaagcaaatcgaagccatgtaccaag 343
Query: 121 tttttcagcactgcaggttgcccattcggtga 152
|||||||||||||| || |||||||| |||||
Sbjct: 344 tttttcagcactgctggctgcccatttggtga 375
>gnl|LJGI|TC73814 similar to UniRef100_A7P000 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (88%)
Length = 1279
Score = 81.8 bits (41), Expect = 6e-15
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 59 ccaagcaagaaatggagtccttatcaactggtgtaggaagcaaattggagccatgtacca 118
|||||| ||||||||||||||| |||||||| |||||||||||| ||||||| || |
Sbjct: 234 ccaagccagaaatggagtccttcacaactggtttaggaagcaaatccaagccatgcacaa 293
Query: 119 agtttttcagcactgcaggttgcccattcggtgaagcatgccattttaggcatcatgttc 178
||||||||||||| | || || ||||| ||||| | ||||||||| |||| ||||||
Sbjct: 294 agtttttcagcacctctgggtgtccatttggtgacggatgccatttcctgcattatgttc 353
Query: 179 ctggcggct 187
|||| ||||
Sbjct: 354 ctggtggct 362