Miyakogusa Predicted Gene

Lj5g3v0866920.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0866920.1 Non Chatacterized Hit- tr|B4FT43|B4FT43_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,63.89,9e-19,HOMEOBOX_2,Homeodomain; Homeobox,Homeodomain;
coiled-coil,NULL; no description,Homeodomain-like;
Hom,NODE_59246_length_311_cov_30.212219.path2.1
         (216 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC65004 similar to UniRef100_Q3E7G2 Cluster: Uncharacte...   428   e-120
gnl|LJGI|TC73385 weakly similar to UniRef100_A7P1V0 Cluster: Chr...   236   4e-62

>gnl|LJGI|TC65004 similar to UniRef100_Q3E7G2 Cluster: Uncharacterized protein
           At3g18380.2; n=1; Arabidopsis thaliana|Rep:
           Uncharacterized protein At3g18380.2 - Arabidopsis
           thaliana (Mouse-ear cress), partial (68%)
          Length = 1417

 Score =  428 bits (216), Expect = e-120
 Identities = 216/216 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggtcgtccacccagtaatggaggccccgccttccgcttcactcagaacgaggtggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atgggtcgtccacccagtaatggaggccccgccttccgcttcactcagaacgaggtggca 179

                                                                       
Query: 61  gaaatggaagctattcttcaggagcacaacaatgcaatgcctgcacgtgatgttcttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gaaatggaagctattcttcaggagcacaacaatgcaatgcctgcacgtgatgttcttgca 239

                                                                       
Query: 121 gttcttgcagagaagttcagtgaatcaccagatcggaaaggcaagattacagtgcagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gttcttgcagagaagttcagtgaatcaccagatcggaaaggcaagattacagtgcagatg 299

                                               
Query: 181 aagcaagtttggaattggtttcaaaataaaaggtat 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 300 aagcaagtttggaattggtttcaaaataaaaggtat 335


>gnl|LJGI|TC73385 weakly similar to UniRef100_A7P1V0 Cluster: Chromosome chr19
           scaffold_4, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (28%)
          Length = 768

 Score =  236 bits (119), Expect = 4e-62
 Identities = 134/139 (96%)
 Strand = Plus / Plus

                                                                       
Query: 53  aggtggcagaaatggaagctattcttcaggagcacaacaatgcaatgcctgcacgtgatg 112
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 630 aggtggcagaaatggaagctattcttcatgagcacaacaatgcaatgccagcacgtgatg 689

                                                                       
Query: 113 ttcttgcagttcttgcagagaagttcagtgaatcaccagatcggaaaggcaagattacag 172
           |||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 690 ttcttgaagttcttgcagagaagttcagtgaatcacctgatcgtaaaggcaagattacag 749

                              
Query: 173 tgcagatgaagcaagtttg 191
           |||||||||||||||||||
Sbjct: 750 tgcagatgaagcaagtttg 768