Miyakogusa Predicted Gene

Lj5g3v0840940.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0840940.2 Non Chatacterized Hit- tr|I1L9L1|I1L9L1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7457
PE=,85.09,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; ATP-DEPENDENT RNA
HELICASE,NULL; HELICASE_ATP_BIND_1,Helicase, s,CUFF.54352.2
         (3093 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC69175 similar to UniRef100_A7QQX0 Cluster: Chromosome...   313   4e-84
gnl|LJGI|FS318755 similar to UniRef100_A7P3F8 Cluster: Chromosom...    54   5e-06

>gnl|LJGI|TC69175 similar to UniRef100_A7QQX0 Cluster: Chromosome undetermined
            scaffold_145, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_145, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (9%)
          Length = 676

 Score =  313 bits (158), Expect = 4e-84
 Identities = 164/166 (98%)
 Strand = Plus / Plus

                                                                        
Query: 2928 tttctctgcttcgaagagtgtcattgagttgataaagaaattacgcggggagcttgacaa 2987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tttctctgcttcgaagagtgtcattgagttgataaagaaattacgcggggagcttgacaa 60

                                                                        
Query: 2988 gcttctaaacagaaagattgtagaaccagggttggacgtttctggtgaaggaaagggagt 3047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gcttctaaacagaaagattgtagaaccagggttggacgtttctggtgaaggaaagggagt 120

                                                          
Query: 3048 ggttgccgctgctgttgagttgctgcacaatcaaatgattcgatga 3093
            |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 121  ggttgccgctgctgttgagttgctgcaccatccaatgattcgatga 166


>gnl|LJGI|FS318755 similar to UniRef100_A7P3F8 Cluster: Chromosome chr1 scaffold_5,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_5, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (26%)
          Length = 812

 Score = 54.0 bits (27), Expect = 5e-06
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1780 agaaaaattgtgctagcaacaaatattgctgagagtagcatcacaatagatgatgttgt 1838
            |||||||| ||||| ||||||||||||||||| |  || ||||||||  ||||||||||
Sbjct: 458  agaaaaatagtgctcgcaacaaatattgctgaaacgagtatcacaatcaatgatgttgt 516