Miyakogusa Predicted Gene
- Lj5g3v0780830.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0780830.1 tr|B9H7B0|B9H7B0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_760878 PE=4
SV=1,40.82,2e-18,seg,NULL,CUFF.53979.1
(1005 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63383 homologue to UniRef100_Q7CTN6 Cluster: Transcri... 848 0.0
gnl|LJGI|TC75931 similar to UniRef100_A7PB64 Cluster: Chromosome... 825 0.0
gnl|LJGI|BW596591 similar to UniRef100_Q40458 Cluster: 23 kDa po... 240 1e-62
gnl|LJGI|BP058055 176 2e-43
gnl|LJGI|TC77914 165 7e-40
>gnl|LJGI|TC63383 homologue to UniRef100_Q7CTN6 Cluster: Transcriptional regulator,
GntR family; n=1; Agrobacterium tumefaciens str.
C58|Rep: Transcriptional regulator, GntR family -
Agrobacterium tumefaciens (strain C58 / ATCC 33970),
partial (6%)
Length = 869
Score = 848 bits (428), Expect = 0.0
Identities = 438/440 (99%), Gaps = 1/440 (0%)
Strand = Plus / Plus
Query: 1 atgagcttactagcttcggattctgctgtagctgcaggaaagaaggaaaaagaaattatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atgagcttactagcttcggattctgctgtagctgcaggaaagaaggaaaaagaaattatt 490
Query: 61 tctggtggcgatacttatttttcaggatcccgtttttgtaatcctgatggtgttggaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tctggtggcgatacttatttttcaggatcccgtttttgtaatcctgatggtgttggaaga 550
Query: 121 tcaggacaatcagatcatagatcacggccaagcatttacaaaactcacaaaggttcaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcaggacaatcagatcatagatcacggccaagcatttacaaaactcacaaaggttcaaac 610
Query: 181 tctaccaataaaaagaagaaaaatgtgagccaacaagctgaacgccctgcaaaagctgct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tctaccaataaaaagaagaaaaatgtgagccaacaagctgaacgccctgcaaaagctgcc 670
Query: 241 gcccctatgactggtcctgcttctgatgaaatgccccccttgagagacttggcccaggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gcccctatgactggtcctgcttctgatgaaatgccccccttgagagacttggcccaggtt 730
Query: 301 gaggcagcaaccctcttacagggccttgtcgtcccaaatactgatcattcatggctaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaggcagcaaccctcttacagggccttgtcgtcccaaatactgatcattcatggctaggc 790
Query: 361 aaatttctgatacacaacagtgagggcattccatggaattgtgatggggttctagctcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aaatttctgatacacaacagtgagggcattccatggaattgtgatggggttctagctcat 850
Query: 421 ttatcaaattgtgcatcact 440
||||| ||||||||||||||
Sbjct: 851 ttatc-aattgtgcatcact 869
>gnl|LJGI|TC75931 similar to UniRef100_A7PB64 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 998
Score = 825 bits (416), Expect = 0.0
Identities = 419/420 (99%)
Strand = Plus / Plus
Query: 586 agctatgactatagaggattgatgaattacatgatcaataatgatttagctctgaaagga 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 agctatgactatagaggattgatgaattacatgatcaataatgatttagctctgaaagga 155
Query: 646 aatttggatggggttgagcttttaatttttccatccaacattctgcctgagagatcccag 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aatttggatggggttgagcttttaatttttccatccaacattctgcctgagagatcccag 215
Query: 706 ctttggaaccagatgatgttcctctggggcgtattcaaagtgcaaaaggtgaataactca 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ctttggaaccagatgatgttcctctggggcgtattcaaagtgcaaaaggtgaataactca 275
Query: 766 gcaaacacaccagtctcaaattctctgaagcaaggaaatggagatactgtgaaaaggggg 825
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gcaaacacaccagtgtcaaattctctgaagcaaggaaatggagatactgtgaaaaggggg 335
Query: 826 gcaattgatctcaatgcatatactgaagatgaaaatgttggcacaaatcttaatcttgca 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcaattgatctcaatgcatatactgaagatgaaaatgttggcacaaatcttaatcttgca 395
Query: 886 gtgcagggtagaagcacaacaccagaaaatggttctgttaggattgagcaccatgttaag 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtgcagggtagaagcacaacaccagaaaatggttctgttaggattgagcaccatgttaag 455
Query: 946 gagctaccaacatcactctctccagcaccgcgttcaactggaaaatatggacccgcgtga 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gagctaccaacatcactctctccagcaccgcgttcaactggaaaatatggacccgcgtga 515
>gnl|LJGI|BW596591 similar to UniRef100_Q40458 Cluster: 23 kDa polypeptide of
water-oxidizing complex of photosystem II; n=1;
Nicotiana tabacum|Rep: 23 kDa polypeptide of
water-oxidizing complex of photosystem II - Nicotiana
tabacum (Common tobacco), partial (6%)
Length = 484
Score = 240 bits (121), Expect = 1e-62
Identities = 163/177 (92%)
Strand = Plus / Plus
Query: 1 atgagcttactagcttcggattctgctgtagctgcaggaaagaaggaaaaagaaattatt 60
||||||||||||||||| |||||||||||| ||||| |||||||||||||| || ||||
Sbjct: 266 atgagcttactagcttctgattctgctgtaactgcactaaagaaggaaaaaggaactatt 325
Query: 61 tctggtggcgatacttatttttcaggatcccgtttttgtaatcctgatggtgttggaaga 120
|||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 326 tctggtggtgattcttatttttcaggatcccgtttttgtaatcctgatgttgttggaggt 385
Query: 121 tcaggacaatcagatcatagatcacggccaagcatttacaaaactcacaaaggttca 177
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct: 386 tcaggacaatcagatcatagatcacggcgaagcatttacaaatctcacaaagattca 442
Score = 65.9 bits (33), Expect = 5e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 81 ttcaggatcccgtttttgtaatcctgatggtgttgga 117
||||||||||||||||||||||||||||| |||||||
Sbjct: 439 ttcaggatcccgtttttgtaatcctgatgttgttgga 475
>gnl|LJGI|BP058055
Length = 470
Score = 176 bits (89), Expect = 2e-43
Identities = 95/97 (97%)
Strand = Plus / Minus
Query: 889 cagggtagaagcacaacaccagaaaatggttctgttaggattgagcaccatgttaaggag 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cagggtagaagcacaacaccagaaaatggttctgttaggattgagcaccatgttaaggag 310
Query: 949 ctaccaacatcactctctccagcaccgcgttcaactg 985
|||||||||||||||||||| ||||||| ||||||||
Sbjct: 309 ctaccaacatcactctctcctgcaccgccttcaactg 273
Score = 60.0 bits (30), Expect = 3e-08
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Minus
Query: 947 agctaccaacatcactctctccagcaccgcgttcaac--tggaaaatatggacccgcgtg 1004
|||||||||||||||||||||| | ||||| |||||| ||||||||||||| | |||||
Sbjct: 470 agctaccaacatcactctctcctgtaccgccttcaactgtggaaaatatggatcggcgtg 411
Query: 1005 a 1005
|
Sbjct: 410 a 410
>gnl|LJGI|TC77914
Length = 746
Score = 165 bits (83), Expect = 7e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 atgagcttactagcttcggattctgctgtagctgcaggaaagaaggaaaaagaaattatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atgagcttactagcttcggattctgctgtagctgcaggaaagaaggaaaaagaaattatt 723
Query: 61 tctggtggcgatacttatttttc 83
|||||||||||||||||||||||
Sbjct: 724 tctggtggcgatacttatttttc 746