Miyakogusa Predicted Gene

Lj5g3v0746870.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0746870.1 Non Chatacterized Hit- tr|O22175|O22175_ARATH
Putative retroelement pol polyprotein OS=Arabidopsis
t,37.25,0.0000000002,INTEGRASE,Integrase, catalytic core; seg,NULL; no
description,NULL; rve,Integrase, catalytic core; g,CUFF.53967.1
         (1498 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP078157                                                     571   e-162

>gnl|LJGI|BP078157 
          Length = 395

 Score =  571 bits (288), Expect = e-162
 Identities = 309/312 (99%), Gaps = 3/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgattggcaggggtaacctgcataacaaactctatctttttgaagcacaaagtcaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atgattggcaggggtaacctgcataacaaactctatctttttgaagcacaaagtcaagtt 254

                                                                       
Query: 61  tttgaagcaaatggttcaccacaagtttctgtttcaagtgttttttc-tcaatcctttgt 119
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 253 tttgaagcaaatggttcaccacaagtttctgtttcaagtgttttttcntcaatcctttgt 194

                                                                       
Query: 120 gtcttctgttttcactagttcaaaca-aaaataaaattgcca-gtttgtggcattctaga 177
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 193 gtcttctgttttcactagttcaaacacaaaataaaattgccacgtttgtggcattctaga 134

                                                                       
Query: 178 ctagggcacttgtctgataaagtgctaaaggttgtaagcaatctagttccttttactgta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ctagggcacttgtctgataaagtgctaaaggttgtaagcaatctagttccttttactgta 74

                                                                       
Query: 238 cttcctgattttcattcacacaattgtaatgtttgtcctttgtctaaaatgagaagactt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  cttcctgattttcattcacacaattgtaatgtttgtcctttgtctaaaatgagaagactt 14

                       
Query: 298 tcatttgtttcc 309
           ||||||||||||
Sbjct: 13  tcatttgtttcc 2