Miyakogusa Predicted Gene
- Lj5g3v0706670.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0706670.1 tr|A9SW65|A9SW65_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_136271,46.99,0.000000000000003,Nucleopor_Nup85,
Nucleoporin Nup85-like; SUBFAMILY NOT NAMED,NULL; FROUNT
PROTEIN-RELATED,NULL,CUFF.53819.1
(297 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58967 homologue to UniRef100_A2A1E8 Cluster: Nucleopo... 589 e-168
gnl|LJGI|FS348619 homologue to UniRef100_A2A1E8 Cluster: Nucleop... 581 e-166
gnl|LJGI|TC62744 UniRef100_A2A1E8 Cluster: Nucleoporin; n=1; Lot... 505 e-143
>gnl|LJGI|TC58967 homologue to UniRef100_A2A1E8 Cluster: Nucleoporin; n=1; Lotus
japonicus|Rep: Nucleoporin - Lotus japonicus, partial
(23%)
Length = 1122
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 atgaagcaaggaatgagcttgttagagaatttattatatcgacaatctgttcaacacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atgaagcaaggaatgagcttgttagagaatttattatatcgacaatctgttcaacacaat 555
Query: 61 gacacattgcttaagaacattgagatttgccgtttgtacgagcttgatcatatcagttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacacattgcttaagaacattgagatttgccgtttgtacgagcttgatcatatcagttca 615
Query: 121 aagatcatgaaggttgctggagtatttcactggaagcatggtcctaaaggtgcaggagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aagatcatgaaggttgctggagtatttcactggaagcatggtcctaaaggtgcaggagta 675
Query: 181 ttttggcttcaacaagcccaagatgcaagttgtctcggtaggattgccctgcagttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttttggcttcaacaagcccaagatgcaagttgtctcggtaggattgccctgcagttattt 735
Query: 241 gatgctgttggaaagttaatttctgatgaaagcttcaagatggtaccggattaagat 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gatgctgttggaaagttaatttctgatgaaagcttcaagatggtaccggattaagat 792
>gnl|LJGI|FS348619 homologue to UniRef100_A2A1E8 Cluster: Nucleoporin; n=1; Lotus
japonicus|Rep: Nucleoporin - Lotus japonicus, partial
(15%)
Length = 637
Score = 581 bits (293), Expect = e-166
Identities = 296/297 (99%)
Strand = Plus / Minus
Query: 1 atgaagcaaggaatgagcttgttagagaatttattatatcgacaatctgttcaacacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atgaagcaaggaatgagcttgttagagaatttattatatcgacaatctgttcaacacaat 530
Query: 61 gacacattgcttaagaacattgagatttgccgtttgtacgagcttgatcatatcagttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gacacattgcttaagaacattgagatttgccgtttgtacgagcttgatcatatcagttca 470
Query: 121 aagatcatgaaggttgctggagtatttcactggaagcatggtcctaaaggtgcaggagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagatcatgaaggttgctggagtatttcactggaagcatggtcctaaaggtgcaggagta 410
Query: 181 ttttggcttcaacaagcccaagatgcaagttgtctcggtaggattgccctgcagttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttttggcttcaacaagcccaagatgcaagttgtctcggtaggattgccctgcagttattt 350
Query: 241 gatgctgttggaaagttaatttctgatgaaagcttcaagatggtaccggattaagat 297
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 349 gatgctgttggaaagttaatttttgatgaaagcttcaagatggtaccggattaagat 293
>gnl|LJGI|TC62744 UniRef100_A2A1E8 Cluster: Nucleoporin; n=1; Lotus japonicus|Rep:
Nucleoporin - Lotus japonicus, complete
Length = 2469
Score = 505 bits (255), Expect = e-143
Identities = 273/279 (97%)
Strand = Plus / Plus
Query: 1 atgaagcaaggaatgagcttgttagagaatttattatatcgacaatctgttcaacacaat 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1470 atgaagcaaggaatgggcttgttagagaatttattatatcgacaatctgtccaacacaat 1529
Query: 61 gacacattgcttaagaacattgagatttgccgtttgtacgagcttgatcatatcagttca 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1530 gacacgctgcttaagaacattgagatttgccgtttgtacgagcttgatcatatcagttca 1589
Query: 121 aagatcatgaaggttgctggagtatttcactggaagcatggtcctaaaggtgcaggagta 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1590 aagatcatgaaggttgctggagtatttcactggaagcatggtcgtaaaggtgcaggagta 1649
Query: 181 ttttggcttcaacaagcccaagatgcaagttgtctcggtaggattgccctgcagttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1650 ttttggcttcaacaagcccaagatgcaagttgtctcggtaggattgccctgcagttattt 1709
Query: 241 gatgctgttggaaagttaatttctgatgaaagcttcaag 279
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 1710 gatgctgttggaaagtcaatttctgatgaaagcttcaag 1748