Miyakogusa Predicted Gene

Lj5g3v0659910.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0659910.2 Non Chatacterized Hit- tr|K4ALX4|K4ALX4_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica ,46.62,1e-18,RNA
recognition motif,RNA recognition motif domain; seg,NULL; no
description,Nucleotide-binding, alp,CUFF.53765.2
         (456 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70724 similar to UniRef100_Q08935 Cluster: 29 kDa rib...   900   0.0  
gnl|LJGI|DC593124 weakly similar to UniRef100_Q43349 Cluster: 29...   389   e-107
gnl|LJGI|AU089453 weakly similar to UniRef100_A7PT43 Cluster: Ch...    70   1e-11

>gnl|LJGI|TC70724 similar to UniRef100_Q08935 Cluster: 29 kDa ribonucleoprotein A,
           chloroplast precursor; n=2; Nicotiana|Rep: 29 kDa
           ribonucleoprotein A, chloroplast precursor - Nicotiana
           sylvestris (Wood tobacco), partial (63%)
          Length = 1476

 Score =  900 bits (454), Expect = 0.0
 Identities = 454/454 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctactacctctgcaacttccctagctcttccaattctccaaactcgacaacctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  atgtctactacctctgcaacttccctagctcttccaattctccaaactcgacaacctctt 144

                                                                       
Query: 61  ggttcttcccagcgtttctcttcatcgttctgcctcaaccctaacttcaaatccatttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ggttcttcccagcgtttctcttcatcgttctgcctcaaccctaacttcaaatccatttcc 204

                                                                       
Query: 121 atttccgcagtgtttcttccttcaacgttgtcgctctcttcctctcgctttgtcacccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atttccgcagtgtttcttccttcaacgttgtcgctctcttcctctcgctttgtcacccgt 264

                                                                       
Query: 181 gtagccgtctcctctgagttcgaccaggaagaggacaccttcagcgacgatgcagagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtagccgtctcctctgagttcgaccaggaagaggacaccttcagcgacgatgcagagacc 324

                                                                       
Query: 241 cgctccttcgcccctgaccacaaggtcttcgtcggaaaccttcctttcagtgtcgacagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgctccttcgcccctgaccacaaggtcttcgtcggaaaccttcctttcagtgtcgacagt 384

                                                                       
Query: 301 gcccagctcgctgagctcttccaagacgctggaaacgttgaagtagttgaggtgatttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcccagctcgctgagctcttccaagacgctggaaacgttgaagtagttgaggtgatttat 444

                                                                       
Query: 361 gataaaatgactggaaatagtaggggatttgcttttgtgactatgtcttccgctgcggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gataaaatgactggaaatagtaggggatttgcttttgtgactatgtcttccgctgcggaa 504

                                             
Query: 421 gctgaagcagctgctcagcagttcaataactatg 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 505 gctgaagcagctgctcagcagttcaataactatg 538


>gnl|LJGI|DC593124 weakly similar to UniRef100_Q43349 Cluster: 29 kDa
           ribonucleoprotein, chloroplast precursor; n=1;
           Arabidopsis thaliana|Rep: 29 kDa ribonucleoprotein,
           chloroplast precursor - Arabidopsis thaliana (Mouse-ear
           cress), partial (22%)
          Length = 588

 Score =  389 bits (196), Expect = e-107
 Identities = 241/256 (94%)
 Strand = Plus / Plus

                                                                       
Query: 199 ttcgaccaggaagaggacaccttcagcgacgatgcagagacccgctccttcgcccctgac 258
           ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 1   ttcgaccgggaagaggacaccttcagcgacgatgtagaaacccgctccttcgcccctgac 60

                                                                       
Query: 259 cacaaggtcttcgtcggaaaccttcctttcagtgtcgacagtgcccagctcgctgagctc 318
           ||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 61  cacaatgtcttcgtcggaagccttcctttcagcgtcgacggtgcccagctcgctgagctc 120

                                                                       
Query: 319 ttccaagacgctggaaacgttgaagtagttgaggtgatttatgataaaatgactggaaat 378
           ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||
Sbjct: 121 ttccaagacgctggaaacgttgaagaagttgagatgaattatgataaaatgactggagat 180

                                                                       
Query: 379 agtaggggatttgcttttgtgactatgtcttccgctgcggaagctgaagcagctgctcag 438
           |||| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 181 agtatgggatttgcttttgtgactatgtcttctgctgctgaagctgacgcagctgctcag 240

                           
Query: 439 cagttcaataactatg 454
           ||||||||||||||||
Sbjct: 241 cagttcaataactatg 256


>gnl|LJGI|AU089453 weakly similar to UniRef100_A7PT43 Cluster: Chromosome chr8
           scaffold_29, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (9%)
          Length = 419

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 410 ccgctgcggaagctgaagcagctgctcagcagttcaataactat 453
           |||||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 231 ccgctgcggaagctgaagcanctgctcancanttcaataactat 274