Miyakogusa Predicted Gene

Lj5g3v0659640.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0659640.1 Non Chatacterized Hit- tr|B9RDU6|B9RDU6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,48.45,9e-18,ARID/BRIGHT DNA binding domain,NULL; BRIGHT, ARID
(A/T-rich interaction domain) d,ARID/BRIGHT DNA-bi,CUFF.53655.1
         (528 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS329136 weakly similar to UniRef100_Q2HUC6 Cluster: EL...   123   1e-27

>gnl|LJGI|FS329136 weakly similar to UniRef100_Q2HUC6 Cluster: ELM2; AT-rich
           interaction region; Homeodomain-related; n=1; Medicago
           truncatula|Rep: ELM2; AT-rich interaction region;
           Homeodomain-related - Medicago truncatula (Barrel
           medic), partial (12%)
          Length = 739

 Score =  123 bits (62), Expect = 1e-27
 Identities = 167/202 (82%)
 Strand = Plus / Plus

                                                                       
Query: 147 tccttttcctccaatgatgggtaatgggaagaaagtagatttgtgcaagttgttcttggt 206
           ||||| |||||||||| ||||| |||||||||| || ||||||| |||| ||| | ||||
Sbjct: 464 tccttatcctccaatgctgggtgatgggaagaaggtggatttgtacaagctgtacatggt 523

                                                                       
Query: 207 ggtgaagggaaaaggcgggtatgatgctgtttgcaatcagaagctttggaatttggctgg 266
           ||||||||| ||||| |||| ||| |||||   ||||  |||||||||| |||||| |||
Sbjct: 524 ggtgaaggggaaaggtgggtttgaggctgtgaccaatgggaagctttgggatttggttgg 583

                                                                       
Query: 267 ggaggagtctggttgtggtgatagtgttggttcgacagtgaaactattttatttaaaata 326
           ||||||||| || |||||||  || |||||| | || |||||||| ||||||   |||||
Sbjct: 584 ggaggagtccgggtgtggtgtgagggttggtcctactgtgaaactgttttatggtaaata 643

                                 
Query: 327 cttgagtgctttagatgcatgg 348
           ||||||| |||| ||| |||||
Sbjct: 644 cttgagtcctttggatacatgg 665