Miyakogusa Predicted Gene

Lj5g3v0658240.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0658240.1 Non Chatacterized Hit- tr|K4ALK8|K4ALK8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si039789,38.58,1e-18,Myb_DNA-bind_3,Myb/SANT-like domain;
seg,NULL,CUFF.53634.1
         (837 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC82256 weakly similar to UniRef100_A7PNI5 Cluster: Chr...   597   e-170
gnl|LJGI|BP068353 similar to UniRef100_Q03VT3 Cluster: Na+-drive...   159   3e-38

>gnl|LJGI|TC82256 weakly similar to UniRef100_A7PNI5 Cluster: Chromosome chr1
            scaffold_22, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr1 scaffold_22, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (12%)
          Length = 1328

 Score =  597 bits (301), Expect = e-170
 Identities = 328/337 (97%)
 Strand = Plus / Plus

                                                                        
Query: 7    aacaacaaaagagagaaatacattatggataactcaaaggctacatgggattttcaagca 66
            ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  aacaacaaaagagagaaagccattatggataactcaaaggctacatgggattttcaagca 777

                                                                        
Query: 67   actaagttgtatgtcaaattatgtttggctgaacatcataaaggggaacgtttaggatcc 126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  actaagttgtatgtcaaattatgtttggctgaacatcataaaggggaacgtttaggatcc 837

                                                                        
Query: 127  agctttacaaagaaagggtggatatctattttaaccaaatttaatgcatcaactggaaga 186
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  aactttacaaagaaagggtggatatctattttaaccaaatttaatgcatcaactggaaga 897

                                                                        
Query: 187  aattatgataagcccaagttaaaaaacaaatgggataattttagaagggagtggcaagca 246
            |||||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||
Sbjct: 898  aattatgataagcccaagttaaaaaacaaatgagataattttaagagggagtgccaagca 957

                                                                        
Query: 247  tggtacaagttatttgaaaaggaaacaggtttgggatgggataaggcaaagaataccgta 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 958  tggtacaagttatttgaaaaggaaacaggtttgggatgggataaggcaaagaatatcgta 1017

                                                 
Query: 307  gatgctccagatgaatggtgggagaaaaagcaattgg 343
            ||||| |||||||||||||||||||||||||||||||
Sbjct: 1018 gatgccccagatgaatggtgggagaaaaagcaattgg 1054



 Score =  363 bits (183), Expect = 1e-99
 Identities = 192/195 (98%)
 Strand = Plus / Plus

                                                                        
Query: 342  ggaaaatccactatatggaaaataccgagagaaaggactttcttttggtgaagaactaac 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 ggaaaatccactatatggaaaataccgagagaaaggactttcttttggtgaagaactaac 1193

                                                                        
Query: 402  tattatgtttaaggatgtggtggctacgggaaagtctgcgtgggcacctacttctgggat 461
            |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1194 tattgtgtttaaggatgtggtggctacgggaaagtctgcatgggcacctacttctgggat 1253

                                                                        
Query: 462  attacctaatgacctaagccaaaatgatgatgtttatcgtccatgcttagagagtgatga 521
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 attacctaatggcctaagccaaaatgatgatgtttatcgtccatgcttagagagtgatga 1313

                           
Query: 522  agaagatagagagga 536
            |||||||||||||||
Sbjct: 1314 agaagatagagagga 1328


>gnl|LJGI|BP068353 similar to UniRef100_Q03VT3 Cluster: Na+-driven multidrug efflux
           pump; n=1; Leuconostoc mesenteroides subsp.
           mesenteroides ATCC, partial (3%)
          Length = 506

 Score =  159 bits (80), Expect = 3e-38
 Identities = 98/104 (94%)
 Strand = Plus / Minus

                                                                       
Query: 734 tagctgatgcaataactaagatagtggatgcatctgagtcacgcaccactgctataaaca 793
           |||||||||| || ||||||||||||||||||||||||||||||||| |||||||  |||
Sbjct: 430 tagctgatgctatcactaagatagtggatgcatctgagtcacgcacccctgctatggaca 371

                                                       
Query: 794 cacttgtagctcccggttcatctattggtgaagttatggctgag 837
           |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cactcgtagctcccggttcatctattggtgaagttatggctgag 327