Miyakogusa Predicted Gene

Lj5g3v0657200.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0657200.1 tr|B9GMN0|B9GMN0_POPTR White-brown-complex ABC
transporter family (Fragment) OS=Populus trichocarpa
,65.08,3e-17,seg,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; no description,NULL; ATP-BINDIN,gene.g59570.t1.1
         (1260 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AU089540 similar to UniRef100_A7PI18 Cluster: Chromosom...   204   1e-51

>gnl|LJGI|AU089540 similar to UniRef100_A7PI18 Cluster: Chromosome chr13 scaffold_17,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr13 scaffold_17, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (16%)
          Length = 645

 Score =  204 bits (103), Expect = 1e-51
 Identities = 184/211 (87%)
 Strand = Plus / Plus

                                                                       
Query: 709 aaggatttatcaaaccgagtaactcctggggtggcccggcaatacagatacttcgttggg 768
           ||||||||||||||||||  ||| ||||| || ||||||||||||||||||| |||||||
Sbjct: 193 aaggatttatcaaaccgaagaacccctggcgtagcccggcaatacagatactacgttggg 252

                                                                       
Query: 769 agggttagcaagcagcttctgcgggaagcaaaattacaagctgttgactatctcctttta 828
            || ||  ||||||||   |||| |||| ||||| |||||| ||||||||||||||||||
Sbjct: 253 cggatttccaagcagcagttgcgagaaggaaaatcacaagcagttgactatctcctttta 312

                                                                       
Query: 829 tttgttgctggtgctatcttaggaactcttacaaaagtgaatgatgaaacatttggttcc 888
           || |||||||||||||||||||| |||||||| ||||| |||||||||||||| || || 
Sbjct: 313 ttagttgctggtgctatcttaggcactcttaccaaagtaaatgatgaaacattcgggtct 372

                                          
Query: 889 cttggctatacatatactgtcattgcagtct 919
           ||||| || ||||||||||||||||| ||||
Sbjct: 373 cttggatacacatatactgtcattgctgtct 403