Miyakogusa Predicted Gene

Lj5g3v0626660.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0626660.1 Non Chatacterized Hit- tr|B9SGP8|B9SGP8_RICCO
DNA-binding protein S1FA, putative OS=Ricinus
communis,71.23,0.0000000000005,seg,NULL; S1FA,DNA binding protein
S1FA,CUFF.53558.1
         (231 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72439 similar to UniRef100_A7NZG3 Cluster: Chromosome...   270   3e-72
gnl|LJGI|TC74290 similar to UniRef100_A7NZG3 Cluster: Chromosome...    66   1e-10

>gnl|LJGI|TC72439 similar to UniRef100_A7NZG3 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (80%)
          Length = 588

 Score =  270 bits (136), Expect = 3e-72
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctgacgacgtgggaaatgggattaacgattctggttcaaaagggatcaacccagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atggctgacgacgtgggaaatgggattaacgattctggttcaaaagggatcaacccagga 203

                                                                       
Query: 61  ttaattgtcctccttgttgttgctgggttagtgttggtatttcttgttggaaattatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttaattgtcctccttgttgttgctgggttagtgttggtatttcttgttggaaattatgta 263

                           
Query: 121 ctctacatatatgcac 136
           ||||||||||||||||
Sbjct: 264 ctctacatatatgcac 279


>gnl|LJGI|TC74290 similar to UniRef100_A7NZG3 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (97%)
          Length = 537

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 102/125 (81%)
 Strand = Plus / Plus

                                                                       
Query: 12  cgtgggaaatgggattaacgattctggttcaaaagggatcaacccaggattaattgtcct 71
           |||||||||||   |||| |||||||| ||  ||||  | |||||||| ||||| || ||
Sbjct: 159 cgtgggaaatgttgttaaggattctggatcccaaggtttgaacccaggcttaatagttct 218

                                                                       
Query: 72  ccttgttgttgctgggttagtgttggtatttcttgttggaaattatgtactctacatata 131
           ||| ||||||||||||||  |||||  ||| || |||||||||||||| |||||||  ||
Sbjct: 219 cctggttgttgctgggttgctgttgacattcctcgttggaaattatgtgctctacaccta 278

                
Query: 132 tgcac 136
           |||||
Sbjct: 279 tgcac 283