Miyakogusa Predicted Gene

Lj5g3v0616120.4
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0616120.4 Non Chatacterized Hit- tr|I1L8R3|I1L8R3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45028
PE,73.38,0,RRM_5,NULL; RNA recognition motif,RNA recognition motif
domain, eukaryote; RNA recognition motif,RNA,CUFF.53517.4
         (1587 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC61415 similar to UniRef100_A7NZC1 Cluster: Chromosome...   107   2e-22
gnl|LJGI|TC73436 similar to UniRef100_A7NZC1 Cluster: Chromosome...   103   3e-21

>gnl|LJGI|TC61415 similar to UniRef100_A7NZC1 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 790

 Score =  107 bits (54), Expect = 2e-22
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                       
Query: 44  ctgaggagatggacttgactgatcagcagctgaagccatgcaaatgcggctacgagatat 103
           |||| |||||||| ||||||||||||||| |||| ||||||||||| ||||| |||||||
Sbjct: 162 ctgaagagatggatttgactgatcagcagttgaaaccatgcaaatgtggctatgagatat 221

                                             
Query: 104 gtgtatggtgttggcaccatataatggaaatggc 137
           |||| ||||||||||| || |||||||| |||||
Sbjct: 222 gtgtctggtgttggcatcacataatggacatggc 255


>gnl|LJGI|TC73436 similar to UniRef100_A7NZC1 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 768

 Score =  103 bits (52), Expect = 3e-21
 Identities = 124/148 (83%)
 Strand = Plus / Plus

                                                                       
Query: 44  ctgaggagatggacttgactgatcagcagctgaagccatgcaaatgcggctacgagatat 103
           |||| |||||||| ||||| ||||||||||||||||| |||||||| || || ||||| |
Sbjct: 157 ctgaagagatggatttgacagatcagcagctgaagccttgcaaatgtggttatgagatct 216

                                                                       
Query: 104 gtgtatggtgttggcaccatataatggaaatggcacagaagaatgaatccgagggtcgtt 163
           |||| |||||||||||||| |||||||| |||||  ||||| ||||  | ||||| || |
Sbjct: 217 gtgtctggtgttggcaccacataatggacatggctgagaaggatgacactgaggggcgat 276

                                       
Query: 164 gtcccgcctgccgttcaccttatgataa 191
           | || || || ||||| |||||||||||
Sbjct: 277 gcccagcgtgtcgttctccttatgataa 304



 Score = 54.0 bits (27), Expect = 3e-06
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 574 agggcctgttttggaaccacaaagtattgccatgcatgg 612
           ||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 684 agggcttgttttggaaccacaaaatattgtcatgcatgg 722