Miyakogusa Predicted Gene

Lj5g3v0615470.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0615470.1 CUFF.53448.1
         (1678 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72802 weakly similar to UniRef100_A7PSU7 Cluster: Chr...   331   8e-90
gnl|LJGI|TC57431 similar to UniRef100_A7PS88 Cluster: Chromosome...    68   2e-10

>gnl|LJGI|TC72802 weakly similar to UniRef100_A7PSU7 Cluster: Chromosome chr8
           scaffold_29, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (8%)
          Length = 533

 Score =  331 bits (167), Expect = 8e-90
 Identities = 230/254 (90%), Gaps = 19/254 (7%)
 Strand = Plus / Plus

                                                                       
Query: 15  ctccttcaacggcctttaccgccacttgctggacctgtttgcctcctccgtcgacgctgg 74
           ||||||||||||||||||||||||||||||||||||        |||||| |||||||||
Sbjct: 299 ctccttcaacggcctttaccgccacttgctggacct--------cctccggcgacgctgg 350

                                                                       
Query: 75  aatctctcctgatagcttcaccgtaaccagcgtcttgaaggcgatcgcttcgccgtcttt 134
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 351 aatctctcctgatagcttcaccgtaaccagcgtcttgaaggcgattgcttcgccgtcttt 410

                                                                       
Query: 135 ttcgtactataaaccggtgaaagaggctcactgttttgttcttcggcgcgggttggagac 194
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttcgtactataagccggtgaaagaggctcactgttttgttcttcggcgcgggttggagac 470

                                                                       
Query: 195 cgatattttcgttgagaatgcgttggtgacttgttattgtaggtgtggtgaaattgggct 254
           ||||||||||||||||||||||||||||           || ||||||||| ||||||||
Sbjct: 471 cgatattttcgttgagaatgcgttggtg-----------tacgtgtggtgagattgggct 519

                         
Query: 255 tgcgaggaaggtgt 268
           ||||||||||||||
Sbjct: 520 tgcgaggaaggtgt 533


>gnl|LJGI|TC57431 similar to UniRef100_A7PS88 Cluster: Chromosome chr14 scaffold_27,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_27, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (28%)
          Length = 828

 Score = 67.9 bits (34), Expect = 2e-10
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                             
Query: 266 tgtttgatggaatgcctgagagagataccgtgtcgtggaactcaatgatt 315
           |||||||| | ||||||| ||||||||||||||||||||| |||||||||
Sbjct: 333 tgtttgatcgtatgcctgtgagagataccgtgtcgtggaattcaatgatt 382