Miyakogusa Predicted Gene
- Lj5g3v0612080.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0612080.1 Non Chatacterized Hit- tr|F1S0W9|F1S0W9_PIG
Uncharacterized protein OS=Sus scrofa GN=NUP214 PE=4
SV=,26.63,4e-16,Nucleoporin domain,NULL; coiled-coil,NULL; seg,NULL;
SUBFAMILY NOT NAMED,NULL; NUCLEAR PORE COMPLEX ,CUFF.53369.1
(5190 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78432 872 0.0
gnl|LJGI|TC73950 similar to UniRef100_Q0IGW9 Cluster: LP21747p; ... 256 1e-66
>gnl|LJGI|TC78432
Length = 440
Score = 872 bits (440), Expect = 0.0
Identities = 440/440 (100%)
Strand = Plus / Plus
Query: 3936 cttgtctaatcaggacccgaaaccaacattgccctcattatctaacccacctttctcgaa 3995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgtctaatcaggacccgaaaccaacattgccctcattatctaacccacctttctcgaa 60
Query: 3996 ttcaacattaacatcagccaaatcagatacccaaccagctggtgtgtctaatttaaagac 4055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcaacattaacatcagccaaatcagatacccaaccagctggtgtgtctaatttaaagac 120
Query: 4056 tgacgatgctgcttcagaagcggtttctcatctaaatgagcctctaaatagtgaatctga 4115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgacgatgctgcttcagaagcggtttctcatctaaatgagcctctaaatagtgaatctga 180
Query: 4116 attgaagctgggatcttcaagaacattcaatcctactactgaacaaccttctaacaatat 4175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgaagctgggatcttcaagaacattcaatcctactactgaacaaccttctaacaatat 240
Query: 4176 aacaagttccgagctcaaagttgtctctgtttctcagtcagaacagccttctggtgcacc 4235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacaagttccgagctcaaagttgtctctgtttctcagtcagaacagccttctggtgcacc 300
Query: 4236 tgtccagctttcaacttctttcattgcttctgctagcgtttcaagtgtgaaaaatgaggg 4295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtccagctttcaacttctttcattgcttctgctagcgtttcaagtgtgaaaaatgaggg 360
Query: 4296 ctttgatgtgggaatatcacaagaggatgagatggaggaagaagcttctgagacaagtaa 4355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctttgatgtgggaatatcacaagaggatgagatggaggaagaagcttctgagacaagtaa 420
Query: 4356 cacaactgaacttagtttgg 4375
||||||||||||||||||||
Sbjct: 421 cacaactgaacttagtttgg 440
>gnl|LJGI|TC73950 similar to UniRef100_Q0IGW9 Cluster: LP21747p; n=1; Drosophila
melanogaster|Rep: LP21747p - Drosophila melanogaster
(Fruit fly), partial (15%)
Length = 488
Score = 256 bits (129), Expect = 1e-66
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 5062 gttccttcagctggtggatttggaggagctggctcaggtggtgggtttggggcatttagc 5121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gttccttcagctggtggatttggaggagctggctcaggtggtgggtttggggcatttagc 169
Query: 5122 aacccaggaagtggtggttttggaggtagtaaaccacctgagctgttcacacagatgaga 5181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aacccaggaagtggtggttttggaggtagtaaaccacctgagctgttcacacagatgaga 229
Query: 5182 aaatagtat 5190
|||||||||
Sbjct: 230 aaatagtat 238
Score = 105 bits (53), Expect = 3e-21
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 4935 tggtggtgggtttggtgcagctgctgctcccactagtggtggatttggtggtg 4987
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 tggtggtgggtttggtgcagctgctgctcccactagtggtggatttggtggtg 98
Score = 89.7 bits (45), Expect = 2e-16
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 4953 agctgctgctcccactagtggtggatttggtggtgctgcttccac 4997
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctgctgctcccactagtggtggatttggtggtgctgcttccac 45