Miyakogusa Predicted Gene
- Lj5g3v0611970.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0611970.2 Non Chatacterized Hit- tr|K4BA61|K4BA61_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,62.13,0,Prokaryotic type I DNA topoisomerase,DNA topoisomerase,
type IA, core domain; no description,Toprim ,CUFF.53333.2
(3150 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC594589 581 e-164
gnl|LJGI|TC74547 278 2e-73
gnl|LJGI|BW610568 similar to UniRef100_A5AWM5 Cluster: DNA topoi... 188 1e-46
>gnl|LJGI|DC594589
Length = 301
Score = 581 bits (293), Expect = e-164
Identities = 299/301 (99%)
Strand = Plus / Plus
Query: 182 ccggttccgcagcgtttgctgttgcgaaatccgttaccggtttcggatttccttttccag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccggttccgcagcgtttgctgttgcgaaatccgttaccggtttcggatttccttttccag 60
Query: 242 ggaatggcgttggaaccagtttgatgttctcgactcgcgctgtggatgatgataaagcga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaatggcgttggaaccagtttgatgttctcgactcgcgctgtggatgatgataaagcga 120
Query: 302 agaaacgagctaaagcagctgcttccgccgtcgttcgcagtaaaggtaagggttctgttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaaacgagctaaagcagctgcttccgccgtcgttcgcagtaaaggtaagggttctgttt 180
Query: 362 ctgaaactgttgacaatgttgaacctgctgcggtgagtcttaaacaggacgacgataaag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgaaactgttgacaatgttgaacctgctgcggtgagtcttaaacaggacgacgataaag 240
Query: 422 tcgctgttaaaaagaagaagacgacgaagaagccggcaacaagcaagaaagaagggaaaa 481
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 241 tcgctgttaaaaagaagaagacgacgaagaagccggccacatgcaagaaagaagggaaaa 300
Query: 482 c 482
|
Sbjct: 301 c 301
>gnl|LJGI|TC74547
Length = 528
Score = 278 bits (140), Expect = 2e-73
Identities = 146/149 (97%)
Strand = Plus / Plus
Query: 3002 ttcatgttccaaaggatatgaacccacgtgatgtcaccttcgaaaaagcccttaaatttt 3061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcatgttccaaaggatatgaacccacgtgatgtcaccttcgaaaaagcccttaaatttt 60
Query: 3062 tgttaggagataatgtgacaaatactggtcgaccaaaatccaaacctaaagtagaagaag 3121
||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct: 61 tgttaggagataatgtgacnaatactggtcgaccnaaatccnaacctaaagtagaagaag 120
Query: 3122 atgaagctgttgaagctttctattagcaa 3150
|||||||||||||||||||||||||||||
Sbjct: 121 atgaagctgttgaagctttctattagcaa 149
>gnl|LJGI|BW610568 similar to UniRef100_A5AWM5 Cluster: DNA topoisomerase; n=1; Vitis
vinifera|Rep: DNA topoisomerase - Vitis vinifera (Grape),
partial (3%)
Length = 458
Score = 188 bits (95), Expect = 1e-46
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1568 caatgaagcttgcacagaaactctatgagggagttgaactagctgatggtgtagcagagg 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 caatgaagcttgcacagaaactctatgagggagttgaactagctgatggtgtagcagagg 73
Query: 1628 gtctgataacatacatcagaactgatggattccat 1662
|||||||||||||||||||||||||||||||||||
Sbjct: 74 gtctgataacatacatcagaactgatggattccat 108