Miyakogusa Predicted Gene

Lj5g3v0540160.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0540160.1 Non Chatacterized Hit- tr|B9SMW1|B9SMW1_RICCO
ATP-binding cassette transporter, putative OS=Ricinus
,21.58,0.000005,seg,NULL; no description,NULL; ATP-BINDING CASSETTE
TRANSPORTER (PDR),NULL; ATP-BINDING CASSETTE TRA,gene.g59222.t1.1
         (1518 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP055095 similar to UniRef100_A7PQG8 Cluster: Chromosom...   101   1e-20
gnl|LJGI|FS343429 similar to UniRef100_Q1M2R7 Cluster: PDR-like ...    64   3e-09

>gnl|LJGI|BP055095 similar to UniRef100_A7PQG8 Cluster: Chromosome chr6 scaffold_25,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_25, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (12%)
          Length = 538

 Score =  101 bits (51), Expect = 1e-20
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                       
Query: 649 attgtgtaccaaggaccaagagaaaatgtgcttgagttttttgaatcaatgggtttcaag 708
           ||||| |||||||| ||| |||| || ||||| ||||||||||| |  ||||||||||||
Sbjct: 339 attgtataccaaggtccacgagagaacgtgctagagttttttgagtacatgggtttcaag 398

                                                          
Query: 709 tgtcctgagagaaaaggagttgctgacttcttacaagaagtgacatc 755
           |||||||| |||||||||| |||||||||  |||||||||| |||||
Sbjct: 399 tgtcctgaaagaaaaggagctgctgactttctacaagaagtaacatc 445


>gnl|LJGI|FS343429 similar to UniRef100_Q1M2R7 Cluster: PDR-like ABC-transporter; n=1;
           Glycine max|Rep: PDR-like ABC-transporter - Glycine max
           (Soybean), partial (17%)
          Length = 742

 Score = 63.9 bits (32), Expect = 3e-09
 Identities = 80/96 (83%)
 Strand = Plus / Plus

                                                                       
Query: 260 ttagtggaatcataaagcctcaaaggatgacattgcttttggggccaccaggctcaggaa 319
           |||||||||| |||||||||   || |||||| |||||||||| || ||| | |||||||
Sbjct: 501 ttagtggaataataaagccttctagaatgacactgcttttgggccctccaagttcaggaa 560

                                               
Query: 320 agactactttgctgttggcgttagctggaaaacttg 355
           | |||||  | |||||||| || |||||||||||||
Sbjct: 561 aaactacactcctgttggcattggctggaaaacttg 596