Miyakogusa Predicted Gene
- Lj5g3v0539710.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0539710.1 Non Chatacterized Hit- tr|C6TLC4|C6TLC4_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,95.12,1e-38,helicase superfamily c-terminal domain,Helicase,
C-terminal; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NA,CUFF.53243.1
(273 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70039 similar to UniRef100_Q0JM17 Cluster: DEAD-box A... 533 e-151
gnl|LJGI|TC63543 similar to UniRef100_Q0JM17 Cluster: DEAD-box A... 488 e-138
gnl|LJGI|TC78076 homologue to UniRef100_A9SV98 Cluster: Predicte... 283 3e-76
gnl|LJGI|TC58050 homologue to UniRef100_Q9LFN6 Cluster: DEAD-box... 135 2e-31
>gnl|LJGI|TC70039 similar to UniRef100_Q0JM17 Cluster: DEAD-box ATP-dependent RNA
helicase 56; n=1; Oryza sativa Japonica Group|Rep:
DEAD-box ATP-dependent RNA helicase 56 - Oryza sativa
subsp. japonica (Rice), partial (23%)
Length = 903
Score = 533 bits (269), Expect = e-151
Identities = 272/273 (99%)
Strand = Plus / Plus
Query: 1 atgctttacctaccccacactgggttgaagcgttataagggttttaaggaggggcagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atgctttacctaccccacactgggttgaagcgttataagggttttaaggaggggcagaca 341
Query: 61 aggattcttgtagcaacagatttggttggtaggggaattgacattgaacgtgtgaatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aggattcttgtagcaacagatttggttggtaggggaattgacattgaacgtgtgaatata 401
Query: 121 gtcataaatcatgacatgcctgattctgcagacacatatttgcacagggttggccgagct 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtcataaattatgacatgcctgattctgcagacacatatttgcacagggttggccgagct 461
Query: 181 ggaaggtttggcaccaaaggtcttgcaattacatttgtttcatgtgctacagatgttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggaaggtttggcaccaaaggtcttgcaattacatttgtttcatgtgctacagatgttgat 521
Query: 241 gttctcaacaatgttcaatccaggtttgaggtg 273
|||||||||||||||||||||||||||||||||
Sbjct: 522 gttctcaacaatgttcaatccaggtttgaggtg 554
>gnl|LJGI|TC63543 similar to UniRef100_Q0JM17 Cluster: DEAD-box ATP-dependent RNA
helicase 56; n=1; Oryza sativa Japonica Group|Rep:
DEAD-box ATP-dependent RNA helicase 56 - Oryza sativa
subsp. japonica (Rice), partial (23%)
Length = 884
Score = 488 bits (246), Expect = e-138
Identities = 249/250 (99%)
Strand = Plus / Plus
Query: 24 gttgaagcgttataagggttttaaggaggggcagacaaggattcttgtagcaacagattt 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gttgaagcgttataagggttttaaggaggggcagacaaggattcttgtagcaacagattt 311
Query: 84 ggttggtaggggaattgacattgaacgtgtgaatatagtcataaatcatgacatgcctga 143
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 312 ggttggtaggggaattgacattgaacgtgtgaatatagtcataaattatgacatgcctga 371
Query: 144 ttctgcagacacatatttgcacagggttggccgagctggaaggtttggcaccaaaggtct 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttctgcagacacatatttgcacagggttggccgagctggaaggtttggcaccaaaggtct 431
Query: 204 tgcaattacatttgtttcatgtgctacagatgttgatgttctcaacaatgttcaatccag 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgcaattacatttgtttcatgtgctacagatgttgatgttctcaacaatgttcaatccag 491
Query: 264 gtttgaggtg 273
||||||||||
Sbjct: 492 gtttgaggtg 501
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 atgctttacctaccccacactgggt 25
|||||||||||||||||||||||||
Sbjct: 197 atgctttacctaccccacactgggt 221
>gnl|LJGI|TC78076 homologue to UniRef100_A9SV98 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(40%)
Length = 822
Score = 283 bits (143), Expect = 3e-76
Identities = 224/251 (89%)
Strand = Plus / Plus
Query: 23 ggttgaagcgttataagggttttaaggaggggcagacaaggattcttgtagcaacagatt 82
|||| ||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||||
Sbjct: 216 ggttaaagcgttataaaggtttcaaggaggggcatacaaggattctggtggcaacagatt 275
Query: 83 tggttggtaggggaattgacattgaacgtgtgaatatagtcataaatcatgacatgcctg 142
||||||||||||| ||||||||||| || || ||||| || |||||| ||||||||||||
Sbjct: 276 tggttggtagggggattgacattgagcgagtcaatatcgttataaattatgacatgcctg 335
Query: 143 attctgcagacacatatttgcacagggttggccgagctggaaggtttggcaccaaaggtc 202
||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct: 336 attctgctgacacatatttacacagggttggccgagctggaagatttggcaccaaaggcc 395
Query: 203 ttgcaattacatttgtttcatgtgctacagatgttgatgttctcaacaatgttcaatcca 262
||||||| ||||||||||||||| || | || || |||||||| |||||||| || || |
Sbjct: 396 ttgcaatcacatttgtttcatgttctgctgacgtcgatgttctaaacaatgtccagtcaa 455
Query: 263 ggtttgaggtg 273
|||||||||||
Sbjct: 456 ggtttgaggtg 466
>gnl|LJGI|TC58050 homologue to UniRef100_Q9LFN6 Cluster: DEAD-box ATP-dependent RNA
helicase 56; n=1; Arabidopsis thaliana|Rep: DEAD-box
ATP-dependent RNA helicase 56 - Arabidopsis thaliana
(Mouse-ear cress), partial (98%)
Length = 1731
Score = 135 bits (68), Expect = 2e-31
Identities = 164/196 (83%)
Strand = Plus / Plus
Query: 23 ggttgaagcgttataagggttttaaggaggggcagacaaggattcttgtagcaacagatt 82
||||||| || || || ||||| || |||||| || |||||||||||| ||||||||||
Sbjct: 1065 ggttgaaacgatacaaaggtttcaaagaggggaagcaaaggattcttgtggcaacagatt 1124
Query: 83 tggttggtaggggaattgacattgaacgtgtgaatatagtcataaatcatgacatgcctg 142
| || || ||||| ||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct: 1125 tagtaggaagggggattgatatagaacgtgttaatatagtcataaactatgacatgcctg 1184
Query: 143 attctgcagacacatatttgcacagggttggccgagctggaaggtttggcaccaaaggtc 202
||||||| || || ||| | ||||||||||| ||||||| || ||||| ||||| || |
Sbjct: 1185 attctgctgatacttatctacacagggttggaagagctggcagatttgggaccaaggggc 1244
Query: 203 ttgcaattacatttgt 218
|||||||||| |||||
Sbjct: 1245 ttgcaattacttttgt 1260