Miyakogusa Predicted Gene
- Lj5g3v0539700.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0539700.2 Non Chatacterized Hit- tr|K3XI13|K3XI13_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si001080,93.2,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; SUBFAMILY NOT NAMED,NULL; FAMILY ,CUFF.53242.2
(312 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS325491 homologue to UniRef100_A7QIQ3 Cluster: Chromos... 133 7e-31
gnl|LJGI|TC58050 homologue to UniRef100_Q9LFN6 Cluster: DEAD-box... 133 7e-31
gnl|LJGI|FS329420 homologue to UniRef100_A7QIQ3 Cluster: Chromos... 107 4e-23
>gnl|LJGI|FS325491 homologue to UniRef100_A7QIQ3 Cluster: Chromosome chr9
scaffold_104, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr9 scaffold_104, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (47%)
Length = 841
Score = 133 bits (67), Expect = 7e-31
Identities = 223/275 (81%)
Strand = Plus / Plus
Query: 1 atggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtctttgttctctca 60
|||||||| || || ||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 466 atggatgttatctgccaagcaaaatctgggatgggaaagactgctgtgtttgttctgtca 525
Query: 61 actttgcagcagattgatcctgttgcagggcaagtttctgctcttgttttgtgtcatact 120
| | ||||| |||||||||||| | || |||||| | || |||||| | || || ||
Sbjct: 526 tcacttcagcaaattgatcctgttcctggtcaagttgcggcccttgttctttgccacacg 585
Query: 121 agggaactagcataccagatatgccatgagtttgagaggttcagcaaacacttgcctgat 180
||||||||||| || ||||| |||||||| |||||||||||||||| | | | ||||||
Sbjct: 586 agggaactagcttatcagatttgccatgaatttgagaggttcagcacatatcttcctgat 645
Query: 181 ctcaaggttgctgtttgttatggtggagtcaatattaaagttcacaaggatctgttgaaa 240
| || |||||||||| ||||| || |||||||| || |||||||| || || | ||
Sbjct: 646 ataaaagttgctgttttctatggaggtgtcaatatcaaggttcacaaagaattgctcaag 705
Query: 241 aatgaatgccctcatattgttgttggtactcctgg 275
|||||||| || |||||||||||||| || |||||
Sbjct: 706 aatgaatgtccccatattgttgttggaacacctgg 740
>gnl|LJGI|TC58050 homologue to UniRef100_Q9LFN6 Cluster: DEAD-box ATP-dependent RNA
helicase 56; n=1; Arabidopsis thaliana|Rep: DEAD-box
ATP-dependent RNA helicase 56 - Arabidopsis thaliana
(Mouse-ear cress), partial (98%)
Length = 1731
Score = 133 bits (67), Expect = 7e-31
Identities = 223/275 (81%)
Strand = Plus / Plus
Query: 1 atggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtctttgttctctca 60
|||||||| || || ||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 335 atggatgttatctgccaagcaaaatctgggatgggaaagactgctgtgtttgttctgtca 394
Query: 61 actttgcagcagattgatcctgttgcagggcaagtttctgctcttgttttgtgtcatact 120
| | ||||| |||||||||||| | || |||||| | || |||||| | || || ||
Sbjct: 395 tcacttcagcaaattgatcctgttcctggtcaagttgcggcccttgttctttgccacacg 454
Query: 121 agggaactagcataccagatatgccatgagtttgagaggttcagcaaacacttgcctgat 180
||||||||||| || ||||| |||||||| |||||||||||||||| | | | ||||||
Sbjct: 455 agggaactagcttatcagatttgccatgaatttgagaggttcagcacatatcttcctgat 514
Query: 181 ctcaaggttgctgtttgttatggtggagtcaatattaaagttcacaaggatctgttgaaa 240
| || |||||||||| ||||| || |||||||| || |||||||| || || | ||
Sbjct: 515 ataaaagttgctgttttctatggaggtgtcaatatcaaggttcacaaagaattgctcaag 574
Query: 241 aatgaatgccctcatattgttgttggtactcctgg 275
|||||||| || |||||||||||||| || |||||
Sbjct: 575 aatgaatgtccccatattgttgttggaacacctgg 609
>gnl|LJGI|FS329420 homologue to UniRef100_A7QIQ3 Cluster: Chromosome chr9
scaffold_104, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr9 scaffold_104, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (34%)
Length = 627
Score = 107 bits (54), Expect = 4e-23
Identities = 138/166 (83%)
Strand = Plus / Plus
Query: 1 atggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtctttgttctctca 60
|||||||| || || ||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 416 atggatgttatctgccaagcaaaatctgggatgggaaagactgctgtgtttgttctgtca 475
Query: 61 actttgcagcagattgatcctgttgcagggcaagtttctgctcttgttttgtgtcatact 120
| | ||||| |||||||||||| | || |||||| | || |||||| | || || ||
Sbjct: 476 tcacttcagcaaattgatcctgttcctggtcaagttgcggcccttgttctttgccacacg 535
Query: 121 agggaactagcataccagatatgccatgagtttgagaggttcagca 166
||||||||||| || ||||| |||||||| ||||||||||||||||
Sbjct: 536 agggaactagcttatcagatttgccatgaatttgagaggttcagca 581