Miyakogusa Predicted Gene

Lj5g3v0539700.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0539700.2 Non Chatacterized Hit- tr|K3XI13|K3XI13_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si001080,93.2,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; SUBFAMILY NOT NAMED,NULL; FAMILY ,CUFF.53242.2
         (312 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS325491 homologue to UniRef100_A7QIQ3 Cluster: Chromos...   133   7e-31
gnl|LJGI|TC58050 homologue to UniRef100_Q9LFN6 Cluster: DEAD-box...   133   7e-31
gnl|LJGI|FS329420 homologue to UniRef100_A7QIQ3 Cluster: Chromos...   107   4e-23

>gnl|LJGI|FS325491 homologue to UniRef100_A7QIQ3 Cluster: Chromosome chr9
           scaffold_104, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr9 scaffold_104, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (47%)
          Length = 841

 Score =  133 bits (67), Expect = 7e-31
 Identities = 223/275 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtctttgttctctca 60
           |||||||| || || ||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 466 atggatgttatctgccaagcaaaatctgggatgggaaagactgctgtgtttgttctgtca 525

                                                                       
Query: 61  actttgcagcagattgatcctgttgcagggcaagtttctgctcttgttttgtgtcatact 120
            |  | ||||| |||||||||||| | || |||||| | || |||||| | || || || 
Sbjct: 526 tcacttcagcaaattgatcctgttcctggtcaagttgcggcccttgttctttgccacacg 585

                                                                       
Query: 121 agggaactagcataccagatatgccatgagtttgagaggttcagcaaacacttgcctgat 180
           ||||||||||| || ||||| |||||||| |||||||||||||||| | |  | ||||||
Sbjct: 586 agggaactagcttatcagatttgccatgaatttgagaggttcagcacatatcttcctgat 645

                                                                       
Query: 181 ctcaaggttgctgtttgttatggtggagtcaatattaaagttcacaaggatctgttgaaa 240
            | || ||||||||||  ||||| || |||||||| || |||||||| ||  || | || 
Sbjct: 646 ataaaagttgctgttttctatggaggtgtcaatatcaaggttcacaaagaattgctcaag 705

                                              
Query: 241 aatgaatgccctcatattgttgttggtactcctgg 275
           |||||||| || |||||||||||||| || |||||
Sbjct: 706 aatgaatgtccccatattgttgttggaacacctgg 740


>gnl|LJGI|TC58050 homologue to UniRef100_Q9LFN6 Cluster: DEAD-box ATP-dependent RNA
           helicase 56; n=1; Arabidopsis thaliana|Rep: DEAD-box
           ATP-dependent RNA helicase 56 - Arabidopsis thaliana
           (Mouse-ear cress), partial (98%)
          Length = 1731

 Score =  133 bits (67), Expect = 7e-31
 Identities = 223/275 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtctttgttctctca 60
           |||||||| || || ||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 335 atggatgttatctgccaagcaaaatctgggatgggaaagactgctgtgtttgttctgtca 394

                                                                       
Query: 61  actttgcagcagattgatcctgttgcagggcaagtttctgctcttgttttgtgtcatact 120
            |  | ||||| |||||||||||| | || |||||| | || |||||| | || || || 
Sbjct: 395 tcacttcagcaaattgatcctgttcctggtcaagttgcggcccttgttctttgccacacg 454

                                                                       
Query: 121 agggaactagcataccagatatgccatgagtttgagaggttcagcaaacacttgcctgat 180
           ||||||||||| || ||||| |||||||| |||||||||||||||| | |  | ||||||
Sbjct: 455 agggaactagcttatcagatttgccatgaatttgagaggttcagcacatatcttcctgat 514

                                                                       
Query: 181 ctcaaggttgctgtttgttatggtggagtcaatattaaagttcacaaggatctgttgaaa 240
            | || ||||||||||  ||||| || |||||||| || |||||||| ||  || | || 
Sbjct: 515 ataaaagttgctgttttctatggaggtgtcaatatcaaggttcacaaagaattgctcaag 574

                                              
Query: 241 aatgaatgccctcatattgttgttggtactcctgg 275
           |||||||| || |||||||||||||| || |||||
Sbjct: 575 aatgaatgtccccatattgttgttggaacacctgg 609


>gnl|LJGI|FS329420 homologue to UniRef100_A7QIQ3 Cluster: Chromosome chr9
           scaffold_104, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr9 scaffold_104, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (34%)
          Length = 627

 Score =  107 bits (54), Expect = 4e-23
 Identities = 138/166 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtctttgttctctca 60
           |||||||| || || ||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 416 atggatgttatctgccaagcaaaatctgggatgggaaagactgctgtgtttgttctgtca 475

                                                                       
Query: 61  actttgcagcagattgatcctgttgcagggcaagtttctgctcttgttttgtgtcatact 120
            |  | ||||| |||||||||||| | || |||||| | || |||||| | || || || 
Sbjct: 476 tcacttcagcaaattgatcctgttcctggtcaagttgcggcccttgttctttgccacacg 535

                                                         
Query: 121 agggaactagcataccagatatgccatgagtttgagaggttcagca 166
           ||||||||||| || ||||| |||||||| ||||||||||||||||
Sbjct: 536 agggaactagcttatcagatttgccatgaatttgagaggttcagca 581